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Zhi Huang1,2，Zhi Han3，Tongxin Wang4，Wei Shao3，Shunian Xiang5，Paul Salama2，Maher Rizkalla2，Kun Huang3,6，Jie Zhang5（School of Electrical and Computer Engineering；Department of Electrical and Computer Engineering；Department of Medicine；Department of Computer Science；Department of Medical and Molecular Genetics；Department of Biostatistics and Health Data Science）.TSUNAMI:Translational Bioinformatics Tool Suite for Network Analysis and Mining[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Jean-Sébastien Milanese1,2，Chabane Tibiche1，Naif Zaman1，Jinfeng Zou1，Pengyong Han3，Zhigang Meng3,4，re Nantel1，Arnaud Droit2，Edwin Wang1,3,5,6（Human Health Therapeutics；Genomics Center；Department of Biochemistry&Molecular Biology；Alberta Children’s Hospital Research Institute and Arnie Charbonneau Cancer Research Institute；Institute of Biotechnology；Department of Medicine）.eTumorMetastasis:A Network-based Algorithm Predicts Clinical Outcomes Using Whole-exome Sequencing Data of Cancer Patients[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Fatima Zohra Smaili1，Shuye Tian2，Ambrish Roy3，Meshari Alazmi1,4，Stefan T.Arold5，Srayanta Mukherjee3，P.Scott Hefty6，Wei Chen2，Xin Gao1（Computational Bioscience Research Center（CBRC）；Department of Biology；Department of Computational Medicine and Bioinformatics；College of Computer Science and Engineering；Biological and Environmental Sciences and Engineering（BESE）Division；Department of Molecular Bioscience）.QAUST:Protein Function Prediction Using Structure Similarity,Protein Interaction,and Functional Motifs[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Yangyang Li1，Zonggui Chen2，Hairong Liu3，Qiming Li1，Xing Lin2，Shuhui Ji3，Rui Li3，Shaopeng Li1，Weiliang Fan1，Haiping Zhao3，Zuoyan Zhu2，Wei Hu2,4，Yu Zhou1,5，Daji Luo2,3,4（State Key Laboratory of Virology；State Key Laboratory of Freshwater Ecology and Biotechnology；School of Basic Medical Science；University of Chinese Academy of Sciences；Frontier Science Center for Immunology and Metabolism）.ASER:Animal Sex Reversal Database[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Bo Hu1，Xiaolu Ma2，Peiyao Fu1,3，Qiman Sun1，Weiguo Tang4，Haixiang Sun1，Zhangfu Yang1，Mincheng Yu1，Jian Zhou1,5,6，Jia Fan1,5,6，Yang Xu1（Department of Liver Surgery and Transplantation；State Key Laboratory of Genetic Engineering；Institute of Biomedical Sciences；Laboratory Medicine Department；Institute of Fudan-Minhang Academic Health System；Endoscopy Centre）.The mRNA–miRNA–lncRNA Regulatory Network and Factors Associated with Prognosis Prediction of Hepatocellular Carcinoma[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Zixiao Lu1，Xiaohui Zhan2,3，Yi Wu3，Jun Cheng2，Wei Shao3，Dong Ni2，Zhi Han3，Jie Zhang4，Qianjin Feng1，Kun Huang3,5,6（Guangdong Provincial Key Laboratory of Medical Image Processing；National-Regional Key Technology Engineering Laboratory for Medical Ultrasound；Department of Medicine；Department of Medical and Molecular Genetics；Department of Biostatistics and Health Data Science；Regenstrief Institute）.BrcaSeg:A Deep Learning Approach for Tissue Quantification and Genomic Correlations of Histopathological Images[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Bo Wang，Zhaoqian Su，Yinghao Wu（Department of Systems and Computational Biology）.Computational Assessment of Protein–protein Binding Affinity by Reversely Engineering the Energetics in Protein Complexes[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Yi Wang1,2，Fatma Lecourieux3，Rui Zhang4，Zhanwu Dai3，David Lecourieux3，Shaohua Li2，Zhenchang Liang1,5（Beijing Key Laboratory of Grape Science and Enology；University of Chinese Academy of Sciences；Ecophysiology and Functional Genomics of Vine；College of Plant Protection；Sino-Africa Joint Research Center）.Data Comparison and Software Design for Easy Selection and Application of CRISPR-based Genome Editing Systems in Plants[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Frieder Hadlich1，Henry Reyer1，Michael Oster1，Nares Trakooljul1，Eduard Muráni1，Siriluck Ponsuksili1，Klaus Wimmers1,2（Research Institute for Farm Animal Biology（FBN）；Faculty of Agricultural and Environmental Sciences）.rePROBE:Workflow for Revised Probe Assignment and Updated Probe-set Annotation in Microarrays[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Edward Simpson1,2,3，Steven Chen1,3，Jill L.Reiter1,3，Yunlong Liu1,2,3（Center for Computational Biology and Bioinformatics；Department of BioHealth Informatics；Department of Medical and Molecular Genetics）.Differential Splicing of Skipped Exons Predicts Drug Response in Cancer Cell Lines[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Na L.Gao1,2，Zilong He3,4,5，Qianhui Zhu3,4,6，Puzi Jiang1，Songnian Hu3,4,6，Wei-Hua Chen1（Key Laboratory of Molecular Biophysics of the Ministry of Education；Institute for Computer Science and Cluster of Excellence on Plant Sciences；CAS Key Laboratory of Genome Sciences and Information；State Key Laboratory of Microbial Resources；Beijing Advanced Innovation Center for Big Data-Based Precision Medicine；University of Chinese Academy of Sciences）.Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Yinzhen Xu1,2,3，Jiayu Cao1，Liang Jiang2,3，Yan Zhang2,3（Shanghai Institute of Nutrition and Health；Shenzhen Key Laboratory of Marine Bioresources and Ecology；Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions）.Biogeographic and Evolutionary Patterns of Trace Element Utilization in Marine Microbial World[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Gongwang Yu1,2，Hanbing Zhu3，Xiaoshu Chen4，Jian-Rong Yang1,2,5（Program in Cancer Research；Department of Medical Informatics；Zhongshan School of Medicine；Department of Genetics and Cell Biology；RNA Biomedical Institute）.Specificity of mRNA Folding and Its Association with Evolutionarily Adaptive mRNA Secondary Structures[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Hammad Naveed1,2，Corinna Reglin3，Thomas Schubert3，Xin Gao4，Stefan TArold5，Michael LMaitland6,7（Toyota Technological Institute at Chicago；Department of Computer Science；2bind GmbH；King Abdullah University of Science and Technology（KAUST）；King Abdullah University of Science and Technology（KAUST）；Inova Center for Personalized Health and Schar Cancer Institute；University of Virginia Cancer Center）.Identifying Novel Drug Targets by iDTPnd:A Case Study of Kinase Inhibitors[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Tina Fuchs1，Kerstin Puellmann2，Chunlin Wang3，Jian Han3,4，Alexander W.Beham5，Michael Neumaier1，Wolfgang E.Kaminski1,6（Institute for Clinical Chemistry；Aesculabor Hamburg；iRepertoire Inc.；HudsonAlpha Institute for Biotechnology；Department of Surgery；Ingenium digital diagnostics）.Trilineage Sequencing Reveals Complex TCRβ Transcriptomes in Neutrophils and Monocytes Alongside T Cells[J].Genomics,Proteomics & Bioinformatics,2021,第6期
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Fuchs Tina，Puellmann Kerstin，Wang Chunlin，Han Jian，Beham Alexander W，Neumaier Michael，Kaminski Wolfgang E.Trilineage Sequencing Reveals Complex TCRbeta Transcriptomes in Neutrophils and Monocytes Alongside T Cells[J].基因组蛋白质组与生物信息学报,2021,第6期
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Yaping Sun1,2，Jifeng Wang1，Xiaojing Guo1，Nali Zhu1，Lili Niu1，Xiang Ding1，Zhensheng Xie1，Xiulan Chen1,2，Fuquan Yang1,2（Key Laboratory of Protein and Peptide Pharmaceuticals&Laboratory of Proteomics；University of Chinese Academy of Sciences）.Oleic Acid and Eicosapentaenoic Acid Reverse Palmitic Acid-induced Insulin Resistance in Human HepG2 Cells via the Reactive Oxygen Species/JUN Pathway[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Xiulan Chen1,2，Yaping Sun1,2，Tingting Zhang1,2，Lian Shu1,2，Peter Roepstorff3，Fuquan Yang1,2（Key Laboratory of Protein and Peptide Pharmaceuticals&Laboratory of Proteomics；University of Chinese Academy of Sciences；Department of Biochemistry and Molecular Biology）.Quantitative Proteomics Using Isobaric Labeling:A Practical Guide[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Tao Zuo1,2，Xiaojian Wu1,3，Weiping Wen4,5,6，Ping Lan1,2,3（Guangdong Institute of Gastroenterology；Center for Fecal Microbiota Transplantation Research；Department of Colorectal Surgery；Department of Otorhinolaryngology；Guangzhou Key Laboratory of Otorhinolaryngology；Department of Otorhinolaryngology）.Gut Microbiome Alterations in COVID-19[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Yuqing Yang1,2,3，Xin Wang4,5，Kaikun Xie1，Congmin Zhu1,6，Ning Chen1，Ting Chen1,7,6（Department of Computer Science and Technology and Institute of Artificial Intelligence；Sogou Inc.；Department of Bioinformatics；Peking Union Medical College；Department of Ultrasound；Beijing National Research Center for Information Science and Technology；State Key Laboratory of Networking and Switching Technology）.kLDM: Inferring Multiple Metagenomic Association Networks Based on the Variation of Environmental Factors[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Xuan He1，Sai Zhang1，Yanqing Zhang1，Zhixin Lei2,3，Tao Jiang4,5,6，Jianyang Zeng1,7（Institute for Interdisciplinary Information Sciences；Peking-Tsinghua Center for Life Sciences；Academy for Advanced Interdisciplinary Studies；Department of Computer Science and Engineering；MOE Key Lab of Bioinformatics and Bioinformatics Division；Institute of Integrative Genome Biology；MOE Key Laboratory of Bioinformatics）.Characterizing RNA Pseudouridylation by Convolutional Neural Networks[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Yun-Mei Wang1,2,3，Saber Khederzadeh1,2，Shi-Rong Li1,2，Newton Otieno Otecko1,2，David M.Irwin4，Mukesh Thakur1,5，Xiao-Die Ren1,2，Ming-Shan Wang1,2，Dong-Dong Wu1,2，Ya-Ping Zhang1,2（State Key Laboratory of Genetic Resources and Evolution；Kunming College of Life Science；Center for Neurobiology and Brain Restoration；Department of Laboratory Medicine and Pathobiology；Zoological Survey of India）.Integrating Genomic and Transcriptomic Data to Reveal Genetic Mechanisms Underlying Piao Chicken Rumpless Trait[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Tingting Li1,2；Ruifeng Li1；Xuan Dong3,4；Lin Shi5,6；Miao Lin7；Ting Peng1；Pengze Wu1；Yuting Liu1；Xiaoting Li1,8；Xuheng He3,4；Xu Han3,4；Bin Kang3,4；Yinan Wang1；Zhiheng Liu1；Qing Chen1；Yue Shen3,9,10；Mingxiang Feng7；Xiangdong Wang5,6；Duojiao Wu5；Jian Wang11,12；Cheng Li1（Center for Bioinformatics, School of Life Sciences, Center for Statistical Science, Peking University；State Key Laboratory of Proteomics, National Center of Biomedical Analysis, Institute of Basic Medical Sciences；BGI-Shenzhen；China National Gene Bank, BGI-Shenzhen；Zhongshan Hospital Institute of Clinical Science, Fudan University, Shanghai Institute of Clinical Bioinformatics；Fudan University Center for Clinical Bioinformatics；Department of Thoracic Surgery, Zhongshan Hospital of Fudan University；School of Life Sciences, Tsinghua University；BGI-Qingdao；Shenzhen Engineering Laboratory for Innovative Molecular Diagnostics,BGI-Shenzhen；iCarbonX；Digital Life Research Institute）.Integrative Analysis of Genome, 3D Genome, and Transcriptome Alterations of Clinical Lung Cancer Samples[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Yin Shen1，Ling-Ling Chen1,2，Junxiang Gao1（Hubei Key Laboratory of Agricultural Bioinformatics；National Key Laboratory of Crop Genetic Improvement）.CharPlant: A De Novo Open Chromatin Region Prediction Tool for Plant Genomes[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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