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Yukun He,Yanan Chu,Shuming Guo,Jiang Hu,Ran Li,Yali Zheng,Xinqian Ma,Zhenglin Du,Lili Zhao,Wenyi Yu,Jianbo Xue,Wenjie Bian,Feifei Yang,Xi Chen,Pingan Zhang,Rihan Wu,Yifan Ma,Changjun Shao,Jing Chen,Jian Wang,Jiwei Li,Jing Wu,Xiaoyi Hu,Qiuyue Long,Mingzheng Jiang,Hongli Ye,Shixu Song,Guangyao Li,Yue Wei,Yu Xu,Yanliang Ma,Yanwen Chen,Keqiang Wang,Jing Bao,Wen Xi,Fang Wang,Wentao Ni,Moqin Zhang,Yan Yu,Shengnan Li,Yu Kang,Zhancheng Gao(Department of Respiratory and Critical Care Medicine, Peking University People’s Hospital;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;Linfen Clinical Medicine Research Center;Institute of Chest and Lung Diseases, Shanxi Medical University;GrandOmics Biosciences Co., Ltd;Beijing Key Laboratory of Genome and Precision Medicine Technologies;Department of Respiratory,Critical Care and Sleep Medicine,Xiang’an Hospital of Xiamen University,School of Medicine,Xiamen University;Institute of PSI Genomics;Beijing Jishuitan Hospital, Capital Medical University;University of Chinese Academy of Sciences).T2T-YAO: A Telomere-to-telomere Assembled Diploid Reference Genome for Han Chinese[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Zhi-Xue Yang,Ya-Wen Fu,Juan-Juan Zhao,Feng Zhang,Si-Ang Li,Mei Zhao,Wei Wen,Lei Zhang,Tao Cheng,Jian-Ping Zhang,Xiao-Bing Zhang(State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology&Blood Diseases Hospital,Chinese Academy of Medical Sciences&Peking Union Medical College;Center for Stem Cell Medicine, Chinese Academy of Medical Sciences;Department of Stem Cell & Regenerative Medicine, Peking Union Medical College).Superior Fidelity and Distinct Editing Outcomes of SaCas9 Compared with SpCas9 in Genome Editing[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Yi Zhou,Wennan Chang,Xiaoyu Lu,Jin Wang,Chi Zhang,Ying Xu(Cancer Systems Biology Center, China-Japan Union Hospital, Jilin University;Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia;Department of Medical and Molecular Genetics, Indiana University School of Medicine;Department of Electrical and Computer Engineering, Purdue University;Department of Biohealth Informatics, Indiana University-Purdue University Indianapolis;Departments of Chemistry and of Physics and Astronomy, Stony Brook University).Acid-base Homeostasis and Implications to the Phenotypic Behaviors of Cancer[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Yongshuai Han,Shihui Wang,Yaomei Wang,Yumin Huang,Chengjie Gao,Xinhua Guo,Lixiang Chen,Huizhi Zhao,Xiuli An(School of Life Sciences, Zhengzhou University;Laboratory of Membrane Biology, New York Blood Center;Institute of Hematology, People’s Hospital of Zhengzhou University;Department of Hematology, the Affiliated Cancer Hospital of Zhengzhou University;Department of Hematology, the First Affiliated Hospital of Zhengzhou University).Comprehensive Characterization and Global Transcriptome Analysis of Human Fetal Liver Terminal Erythropoiesis[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Deqi Yin,Ning Jiang,Chang Cheng,Xiaoyu Sang,Ying Feng,Ran Chen,Qijun Chen(Key Laboratory of Livestock Infectious Diseases in Northeast China, Ministry of Education, Key Laboratory of Zoonosis, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University;The Research Unit for Pathogenic Mechanisms of Zoonotic Parasites, Chinese Academy of Medical Sciences).Protein Lactylation and Metabolic Regulation of the Zoonotic Parasite Toxoplasma gondii[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Gongchen Zhang,Chenyu Zhu,Xiaohan Chen,Jifang Yan,Dongyu Xue,Zixuan Wei,Guohui Chuai,Qi Liu(Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine,Shanghai East Hospital,Bioinformatics Department, School of Life Sciences and Technology, Tongji University).Systematic Exploration of Optimized Base Editing gRNA Design and Pleiotropic Effects with BExplorer[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Wing Yin Cheng,Wei-Xin Liu,Yanqiang Ding,Guoping Wang,Yu Shi,Eagle S.H.Chu,Sunny Wong,Joseph J.Y.Sung,Jun Yu(State Key Laboratory of Digestive Disease,Institute of Digestive Disease and The Department of Medicine and Therapeutics,Li Ka Shing Institute of Health Sciences, Shenzhen Research Institute, The Chinese University of Hong Kong;Lee Kong Chian School of Medicine, Nanyang Technology University).High Sensitivity of Shotgun Metagenomic Sequencing in Colon Tissue Biopsy by Host DNA Depletion[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Ann-Yae Na,Hyojin Lee,Eun Ki Min,Sanjita Paudel,So Young Choi,HyunChae Sim,Kwang-Hyeon Liu,Ki-Tae Kim,Jong-Sup Bae,Sangkyu Lee(Research Institute of Pharmaceutical Sciences, Kyungpook National University;Department of Environmental Engineering, Seoul National University of Science and Technology;BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy, Kyungpook National University;School of Pharmacy, Sungkyunkwan University).Novel Time-dependent Multi-omics Integration in Sepsis-associated Liver Dysfunction[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Jiazhen Zheng,Yue Li,Ning Liu,Jihui Zhang,Shuangjiang Liu,Huarong Tan(State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences;College of Life Sciences, University of Chinese Academy of Sciences;State Key Laboratory of Microbial Biotechnology, Shandong University).Multi-omics Data Reveal the Effect of Sodium Butyrate on Gene Expression and Protein Modification in Streptomyces[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Zi-Jun Quan,Si-Ang Li,Zhi-Xue Yang,Juan-Juan Zhao,Guo-Hua Li,Feng Zhang,Wei Wen,Tao Cheng,Xiao-Bing Zhang(State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Haihe Laboratory of Cell Ecosystem, Institute of Hematology & Blood Diseases Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College;Center for Stem Cell Medicine, Chinese Academy of Medical Sciences;Department of Stem Cell & Regenerative Medicine, Peking Union Medical College).GREPore-seq: A Robust Workflow to Detect Changes After Gene Editing Through Long-range PCR and Nanopore Sequencing[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Wenjun Li,Likun Wang,Xiaofang Li,Xin Zheng,Michael F.Cohen,Yong-Xin Liu(Hebei Key Laboratory of Soil Ecology, Centre for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences;University of Chinese Academy of Sciences;Department of Biology, Sonoma State University;State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences).Sequence-based Functional Metagenomics Reveals Novel Natural Diversity of Functional CopA in Environmental Microbiomes[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Xin-Lu Meng,Peng-Bo Yuan,Xue-Ju Wang,Jing Hang,Xiao-Ming Shi,Yang-Yu Zhao,Yuan Wei(Department of Obstetrics and Gynecology, Peking University Third Hospital;Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital;Key Laboratory of Assisted Reproduction, Ministry of Education;Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction;National Clinical Research Center for Obstetrics and Gynecology).The Proteome Landscape of Human Placentas for Monochorionic Twins with Selective Intrauterine Growth Restriction[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Xue Zhang(McKusick-Zhang Center for Genetic Medicine;Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College (CAMS&PUMC)).T2T-YAO Reference Genome of Han Chinese —New Step in Advancing Precision Medicine in China[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Jingfa Xiao,Jun Yu(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences).T2T-YAO, T2T-SHUN, and more[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Renbo Tan,Yi Zhou,Zheng An,Ying Xu(Cancer Systems Biology Center, China-Japan Union Hospital of Jilin University;College of Computer Science and Technology, Jilin University;Department of Biochemistry and Molecular Biology,and Institute of Bioinformatics,University of Georgia).Cancer Is A Survival Process under Persistent Microenvironmental and Cellular Stresses[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Farzaneh Esmaili,Mahdi Pourmirzaei,Shahin Ramazi,Seyedehsamaneh Shojaeilangari,Elham Yavari(Department of Information Technology, Tarbiat Modares University;Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University;Biomedical Engineering Group, Department of Electrical Engineering and Information Technology, Iranian Research Organization for Science and Technology (IROST)).A Review of Machine Learning and Algorithmic Methods for Protein Phosphorylation Site Prediction[J].Genomics,Proteomics & Bioinformatics,2023,第6期
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Lina Ma,Dong Zou,Lin Liu,Huma Shireen,Amir A.Abbasi,Alex Bateman,Jingfa Xiao,Wenming Zhao,Yiming Bao,Zhang Zhang(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences;National Center for Bioinformatics, Programme of Comparative and Evolutionary Genomics, Faculty of Biological Sciences,Quaid-i-Azam University;European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton).Database Commons: A Catalog of Worldwide Biological Databases[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Bin Huang,Lupeng Kong,Chao Wang,Fusong Ju,Qi Zhang,Jianwei Zhu,Tiansu Gong,Haicang Zhang,Chungong Yu,Wei-Mou Zheng,Dongbo Bu(Key Laboratory of Intelligent Information Processing, Institute of Computing Technology, Chinese Academy of Sciences;University of Chinese Academy of Sciences;Changping Laboratory;Microsoft Research AI4Science;Huawei Noah’s Ark Lab;Zhongke Big Data Academy;Institute of Theoretical Physics, Chinese Academy of Sciences).Protein Structure Prediction: Challenges,Advances,and the Shift of Research Paradigms[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Xiaopeng Xu,Tiantian Xu,Juexiao Zhou,Xingyu Liao,Ruochi Zhang,Yu Wang,Lu Zhang,Xin Gao(Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology;State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences;University of Chinese Academy of Sciences;Syneron Technology;Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry).AB-Gen: Antibody Library Design with Generative Pre-trained Transformer and Deep Reinforcement Learning[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Lin-Fang Ju,Heng-Ji Xu,Yun-Gui Yang,Ying Yang(Sino-Danish College, University of Chinese Academy of Sciences;University of Chinese Academy of Sciences;CAS Key Laboratory of Genomic and Precision Medicine, Collaborative Innovation Center of Genetics and Development, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;Institute of Stem Cell and Regeneration, Chinese Academy of Sciences).Omics Views of Mechanisms for Cell Fate Determination in Early Mammalian Development[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Yuliang Pan,Ruiyi Li,Wengen Li,Liuzhenghao Lv,Jihong Guan,Shuigeng Zhou(Department of Computer Science and Technology, College of Electronic and Information Engineering, Tongji University;Translational Medical Center for Stem Cell Therapy, Shanghai East Hospital, School of Medicine, Tongji University;Shanghai Key Laboratory of Intelligent Information Processing, School of Computer Science, Fudan University).HPC-Atlas: Computationally Constructing A Comprehensive Atlas of Human Protein Complexes[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Yiming Bao,Yongbiao Xue(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences).From BIG Data Center to China National Center for Bioinformation[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Cuiping Li,Lina Ma,Dong Zou,Rongqin Zhang,Xue Bai,Lun Li,Gangao Wu,Tianhao Huang,Wei Zhao,Enhui Jin,Yiming Bao,Shuhui Song(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences;Sino-Danish College, University of Chinese Academy of Sciences).RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration,Variant Monitoring,and Risk Pre-warning[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Yicong Shen,Yuanxu Gao,Jiangcheng Shi,Zhou Huang,Rongbo Dai,Yi Fu,Yuan Zhou,Wei Kong,Qinghua Cui(Department of Physiology and Pathophysiology,School of Basic Medical Sciences,State Key Laboratory of Vascular Homeostasis and Remodeling, Peking University;State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology;Department of Biomedical Informatics, Center for Noncoding RNA Medicine, School of Basic Medical Sciences, Peking University).MicroRNA–disease Network Analysis Repurposes Methotrexate for the Treatment of Abdominal Aortic Aneurysm in Mice[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Enhui Jin,Dongli Zhao,Gangao Wu,Junwei Zhu,Zhonghuang Wang,Zhiyao Wei,Sisi Zhang,Anke Wang,Bixia Tang,Xu Chen,Yanling Sun,Zhe Zhang,Wenming Zhao,Yuanguang Meng(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;Chinese People’s Liberation Army (PLA) Medical School;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences;Department of Obstetrics and Gynecology, Seventh Medical Center of Chinese PLA General Hospital).OBIA: An Open Biomedical Imaging Archive[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Yaojun Wang,Shiwei Sun(College of Information and Electrical Engineering, China Agricultural University;Key Laboratory of Intelligent Information Processing, Institute of Computing Technology, Chinese Academy of Sciences;University of Chinese Academy of Sciences).Revolutionizing Antibody Discovery: An Innovative AI Model for Generating Robust Libraries[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Jennifer A.Karlow,Erica C.Pehrsson,Xiaoyun Xing,Mark Watson,Siddhartha Devarakonda,Ramaswamy Govindan,Ting Wang(Department of Genetics, Washington University School of Medicine, St. Louis;The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis;Department of Pathology and Immunology, Washington University School of Medicine, St. Louis;Department of Medicine, Washington University School of Medicine, St. Louis;McDonnell Genome Institute, Washington University School of Medicine, St. Louis).Non-small Cell Lung Cancer Epigenomes Exhibit Altered DNA Methylation in Smokers and Neversmokers[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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Tingfu Du,Chunchun Gao,Shuaiyao Lu,Qianlan Liu,Yun Yang,Wenhai Yu,Wenjie Li,Yong Qiao Sun,Cong Tang,Junbin Wang,Jiahong Gao,Yong Zhang,Fangyu Luo,Ying Yang,Yun-Gui Yang,Xiaozhong Peng(National Kunming High-level Biosafety Primate Research Center, Institute of Medical Biology, Chinese Academy of Medical Sciences and Peking Union Medical College;State Key Laboratory of Medical Molecular Biology, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Medical Primate Research Center, Neuroscience Center, Chinese Academy of Medical Sciences,School of Basic Medicine, Peking Union Medical College;CAS Key Laboratory of Genomic and Precision Medicine, Collaborative Innovation Center of Genetics and Development,College of Future Technology, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;Sino-Danish College, University of Chinese Academy of Sciences;Institute of Stem Cell and Regeneration, Chinese Academy of Sciences;Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Peking Union Medical College).Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques[J].Genomics, Proteomics & Bioinformatics,2023,第5期
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