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Ruona Shi1,2,Zhenhuan Feng1,2,Xiaofei Zhang1,2,3(CAS Key Laboratory of Regenerative Biology;University of Chinese Academy of Sciences;Center for Cell Lineage and Atlas).Integrative Multi-omics Landscape of Non-structural Protein 3 of Severe Acute Respiratory Syndrome Coronaviruses[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Shuhui Song1,2,3,Cuiping Li1,2,3,Lu Kang1,4,5,Dongmei Tian1,2,3,Nazish Badar6,Wentai Ma1,4,5,Shilei Zhao1,4,5,Xuan Jiang1,5,Chun Wang1,4,5,Yongqiao Sun1,Wenjie Li1,Meng Lei1,Shuangli Li1,Qiuhui Qi1,Aamer Ikram6,Muhammad Salman6,Massab Umair6,Huma Shireen7,Fatima Batool7,Bing Zhang1,Hua Chen1,4,5,8,Yun-Gui Yang1,4,5,Amir Ali Abbasi7,Mingkun Li1,4,5,8,Yongbiao Xue1,4,9,Yiming Bao1,2,3,4(China National Center for Bioinformation;National Genomics Data Center;CAS Key Laboratory of Genome Sciences and Information;University of Chinese Academy of Sciences;CAS Key Laboratory of Genomic and Precision Medicine;Department of Virology and Immunology;National Center for Bioinformatics;Center for Excellence in Animal Evolution and Genetics;State Key Laboratory of Plant Cell and Chromosome Engineering).Genomic Epidemiology of SARS-CoV-2 in Pakistan[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Zhaowei Xu1,2,Yang Li1,Qing Lei3,Likun Huang4,Dan-yun Lai1,Shu-juan Guo1,He-wei Jiang1,Hongyan Hou5,Yun-xiao Zheng1,Xue-ning Wang1,Jiaoxiang Wu6,Ming-liang Ma1,Bo Zhang5,Hong Chen1,Caizheng Yu7,Jun-biao Xue1,Hai-nan Zhang1,Huan Qi1,Siqi Yu2,Mingxi Lin2,Yandi Zhang3,Xiaosong Lin3,Zongjie Yao3,Huiming Sheng6,Ziyong Sun5,Feng Wang5,Xionglin Fan3,Sheng-ce Tao1(Shanghai Center for Systems Biomedicine;Key Laboratory of Gastrointestinal Cancer(Fujian Medical University);Department of Pathogen Biology;Fujian Key Laboratory of Crop Breeding by Design;Department of Clinical Laboratory;Tongren Hospital;Department of Public Health).COVID-ONE-hi: The One-stop Database for COVID-19-specific Humoral Immunity and Clinical Parameters[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Pengju Zhao1,Xianrui Zheng1,Ying Yu1,Zhuocheng Hou1,Chenguang Diao1,Haifei Wang1,Huimin Kang1,Chao Ning1,Junhui Li1,Wen Feng1,Wen Wang2,George E.Liu3,Bugao Li4,Jacqueline Smith5,Yangzom Chamba6,Jian-Feng Liu1(National Engineering Laboratory for Animal Breeding;Center for Ecological and Environmental Sciences;Animal Genomics and Improvement Laboratory;Department of Animal Sciences and Veterinary Medicine;The Roslin Institute and Royal(Dick)School of Veterinary Studies;Tibet Agriculture and Animal Husbandry College).Mining Unknown Porcine Protein Isoforms by Tissue-based Map of Proteome Enhances Pig Genome Annotation[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Xiaozeng Yang1,2,Elane Fishilevich2,3,Marcelo A.German2,Premchand Gandra2,Robert E.McEwan2,André Billion4,Eileen Knorr4,Andreas Vilcinskas4,Kenneth E.Narva2(Beijing Agro-biotechnology Research Center;Corteva Agriscience;University of Nebraska-Lincoln;Fraunhofer Institute for Molecular Biology and Applied Ecology).Elucidation of the MicroRNA Transcriptome in Western Corn Rootworm Reveals Its Dynamic and Evolutionary Complexity[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Kjersti Rise1,May-Britt Tessem2,Finn Drabl?s1,Morten B.Rye1,3(Department of Clinical and Molecular Medicine;Department of Circulation and Medical Imaging;Clinic of Surgery).FunHoP: Enhanced Visualization and Analysis of Functionally Homologous Proteins in Complex Metabolic Networks[J].Genomics,Proteomics & Bioinformatics,2021,第5期
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Tingting Chen1,2,3,Xu Chen1,2,3,Sisi Zhang1,2,3,Junwei Zhu1,2,3,Bixia Tang1,2,3,Anke Wang1,2,3,Lili Dong1,2,3,Zhewen Zhang1,2,3,Caixia Yu1,2,3,Yanling Sun1,2,3,Lianjiang Chi1,2,4,Huanxin Chen1,2,3,Shuang Zhai1,2,3,Yubin Sun1,2,3,Li Lan1,2,3,Xin Zhang1,2,3,Jingfa Xiao1,2,3,5,Yiming Bao1,2,3,5,Yanqing Wang1,2,3,Zhang Zhang1,2,3,5,Wenming Zhao1,2,3,5(China National Center for Bioinformation;National Genomics Data CenterBeijing Institute of GenomicsChinese Academy of Sciences;CAS Key Laboratory of Genome Sciences and InformationBeijing Institute of GenomicsChinese Academy of Sciences;CAS Key Laboratory of Genomic and Precision MedicineBeijing Institute of GenomicsChinese Academy of Sciences;University of Chinese Academy of Sciences).The Genome Sequence Archive Family:Toward Explosive Data Growth and Diverse Data Types[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Lilin Yin1,2,Haohao Zhang3,Zhenshuang Tang1,2,Jingya Xu1,2,Dong Yin1,2,Zhiwu Zhang4,Xiaohui Yuan3,Mengjin Zhu1,2,Shuhong Zhao1,2,Xinyun Li1,2,Xiaolei Liu1,2(Key Laboratory of Agricultural Animal GeneticsBreeding and ReproductionMinistry of Education&College of Animal Science and TechnologyHuazhong Agricultural University;Key Laboratory of Swine Genetics and BreedingMinistry of AgricultureHuazhong Agricultural University;School of Computer Science and TechnologyWuhan University of Technology;Department of Crop and Soil SciencesWashington State UniversityPullmanWA 99164).rMVP:A Memory-efficient,Visualization-enhanced,and Parallel-accelerated Tool for Genome-wide Association Study[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Jiabo Wang1,2,Zhiwu Zhang2(Key Laboratory of Qinghai-Tibetan Plateau Animal Genetic Resource Reservation and UtilizationSichuan Province and Ministry of EducationSouthwest Minzu University;Department of Crop and Soil SciencesWashington State UniversityPullmanWA 99164).GAPIT Version 3:Boosting Power and Accuracy for Genomic Association and Prediction[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Meili Chen1,2;Yingke Ma1,2;Song Wu1,2,3;Xinchang Zheng1,2;Hongen Kang1,2,3;Jian Sang1,2,3,4;Xingjian Xu1,2,3,5;Lili Hao1,2;Zhaohua Li1,2,3;Zheng Gong1,2,3;Jingfa Xiao1,2,3;Zhang Zhang1,2,3;Wenming Zhao1,2,3;Yiming Bao1,2,3(National Genomics Data Center,Beijing Institute of Genomics,Chinese Academy of Sciences/China National Center for Bioinformation;CAS Key Laboratory of Genome Sciences and Information,Beijing Institute of Genomics,Chinese Academy of Sciences;University of Chinese Academy of Sciences;Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health;College of Computer Science Technology, Inner Mongolia Normal University).Genome Warehouse:A Public Repository Housing Genomescale Data[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Zihu Guo1,2,Yingxue Fu2,Chao Huang2,Chunli Zheng1,Ziyin Wu2,3,Xuetong Chen2,Shuo Gao2,Yaohua Ma1,Mohamed Shahen4,Yan Li5,Pengfei Tu6,Jingbo Zhu7,Zhenzhong Wang3,Wei Xiao3,Yonghua Wang1,2,3(College of Life ScienceNorthwest University;College of Life ScienceNorthwest A &F University;Zoology DepartmentFaculty of ScienceTanta UniversityTanta 31527;Key Laboratory of Industrial Ecology and Environmental Engineering(Ministry of Education)Faculty of ChemicalEnvironmental and Biological Science and TechnologyDalian University of Technology;State Key Laboratory of Natural and Biomimetic DrugsSchool of Pharmaceutical SciencesPeking University;School of Food Science and TechnologyDalian Polytechnic University;State Key Laboratory of New-tech for Chinese Medicine Pharmaceutical Process).NOGEA:A Network-oriented Gene Entropy Approach for Dissecting Disease Comorbidity and Drug Repositioning[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Xintao Qiu1,2,Avery S.Feit2,3,Ariel Feiglin4,Yingtian Xie1,Nikolas Kesten1,Len Taing1,5,Joseph Perkins1,Shengqing Gu5,Yihao Li2,Paloma Cejas1,2,Ningxuan Zhou1,2,Rinath Jeselsohn2,Myles Brown1,2,X.Shirley Liu1,5,Henry W.Long1,2(Center for Functional Cancer EpigeneticsDana-Farber Cancer InstituteBostonMA 02215;Department of Medical OncologyDana-Farber Cancer InstituteHarvard Medical SchoolBostonMA 02215;Albert Einstein College of MedicineBronxNY 10461;Department of Biomedical InformaticsHarvard Medical SchoolBostonMA 02215;Department of Data SciencesDana Farber Cancer InstituteHarvard T.H.Chan School of Public HealthBostonMA 02215).CoBRA:Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Jiangming Huang1,2,Mengxi Wu1,2,Yang Zhang1,2,Siyuan Kong1,Mingqi Liu1,Biyun Jiang1,2,Pengyuan Yang1,2,3,Weiqian Cao1,2,3(Department of Chemistry and Institutes of Biomedical SciencesFudan University;The Fifth People’s HospitalFudan Universityand the Shanghai Key Laboratory of Medical Epigeneticsthe International Colaboratory of Medical Epigenetics and MetabolismMinistry of Science and TechnologyFudan University;NHC Key Laboratory of Glycoconjugates Research (Fudan University)).OGP:A Repository of Experimentally Characterized O-glycoproteins to Facilitate Studies on O-glycosylation[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Yanyan Li1,2,Honghong Zhou2,Xiaomin Chen2,3,Yu Zheng1,2,Quan Kang2,Di Hao2,Lili Zhang2,3,Tingrui Song2,Huaxia Luo2,Yajing Hao4,Runsheng Chen2,3,5,Peng Zhang2,Shunmin He1,2(College of Life SciencesUniversity of Chinese Academy of Sciences;Key Laboratory of RNA BiologyCenter for Big Data Research in HealthInstitute of BiophysicsChinese Academy of Sciences;University of Chinese Academy of Sciences;Department of Cellular and Molecular MedicineUniversity of CaliforniaSan DiegoLa JollaCA 92093;Guangdong Geneway Decoding Bio-Tech Co.Ltd).SmProt:A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Ya Cui,Jason Sheng Li,Wei Li(Division of Computational Biomedicine,Department of Biological Chemistry,School of Medicine,University of California).From Reads to Insights:Integrative Pipelines for Biological Interpretation of ATAC-seq Data[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Shengquan Chen1,Mingxin Gan2,Hairong Lv1,Rui Jiang1(Ministry of Education Key Laboratory of BioinformaticsBioinformatics Division at the Beijing National Research Center for Information Science and TechnologyCenter for Synthetic and Systems BiologyDepartment of AutomationTsinghua University;Department of Management Science and EngineeringSchool of Economics and ManagementUniversity of Science and Technology Beijing).DeepCAPE:A Deep Convolutional Neural Network for the Accurate Prediction of Enhancers[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Shaopeng Liu1,Daofeng Li2,Cheng Lyu1,Paul M.Gontarz1,Benpeng Miao1,2,Pamela A.F.Madden3,Ting Wang2,Bo Zhang1(Department of Developmental BiologyCenter of Regenerative MedicineWashington University School of MedicineSt.LouisMO 63108;Department of GeneticsCenter for Genomic Sciences and Systems BiologyWashington University School of MedicineSt.LouisMO 63108;Department of PsychiatryWashington University School of MedicineSt.LouisMO 63108).AIAP:A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Xi Cheng1,Lili Qian2,3,Bo Wang1,Minjia Tan2,3,Jing Li1(Department of Bioinformatics and BiostatisticsSchool of Life Sciences and BiotechnologyShanghai Jiao Tong University;The Chemical Proteomics Center and State Key Laboratory of Drug ResearchShanghai Institute of Materia MedicaChinese Academy of Sciences;University of Chinese Academy of Sciences).SPA:A Quantitation Strategy for MS Data in Patient-derived Xenograft Models[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Xujun Wang1,Zhengtao Zhang2,Wenyi Qin3,4,Shiyi Liu1,Cong Liu3,5,Georgi Z.Genchev1,6,Lijian Hui2,Hongyu Zhao1,7,Hui Lu1,3,7,8,9(SJTU-Yale Joint Center for Biostatistics and Data ScienceDepartment of Bioinformatics and BiostatisticsSchool of Life Science and BiotechnologyShanghai Jiao Tong University;State Key Laboratory of Cell BiologyCAS Center for Excellence in Molecular Cell ScienceShanghai Institute of Biochemistry and Cell Biology;Department of BioengineeringUniversity of Illinois at ChicagoChicagoIL 60607;Department of GeneticsSchool of MedicineYale UniversityNew HavenCT 06511;Department of Medical InformaticsColumbia UniversityNew YorkNY 10032;;Department of BiostatisticsYale School of Public HealthNew HavenCT 06511;Institute of Science and Technology for Brain-Inspired IntelligenceFudan University;Center for Biomedical informaticsShanghai Children’s Hospital).RePhine:An Integrative Method for Identification of Drug Response-related Transcriptional Regulators[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Yu Wang1,Fang-Yuan Shi1,Yu Liang2,Ge Gao1(State Key Laboratory of Protein and Plant Gene ResearchSchool of Life SciencesBiomedical Pioneering Innovation Center(BIOPIC)&Beijing Advanced Innovation Center for Genomics(ICG)Center for Bioinformatics(CBI)Peking University;Human Aging Research InstituteSchool of Life SciencesNanchang University).REVA as A Well-curated Database for Human Expressionmodulating Variants[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Guanghong Zuo(T-Life Research CenterDepartment of PhysicsFudan University).CVTree:A Parallel Alignment-free Phylogeny and Taxonomy Tool Based on Composition Vectors of Genomes[J].Genomics,Proteomics & Bioinformatics,2021,第4期
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Wei Ge1,Weidong Zhang1,Yuelang Zhang1,Yujie Zheng1,Fang Li1,Shanhe Wang1,2,Jinwang Liu3,Shaojing Tan4,Zihui Yan4,Lu Wang4,Wei Shen4,Lei Qu3,Xin Wang1(Key Laboratory of Animal Genetics Breeding and Reproduction of Shaanxi Province College of Animal Science and TechnologyNorthwest A&F University;College of Animal Science & Technology Yangzhou University;Life Science Research Center Yulin University;College of Life Sciences Qingdao Agricultural University).A Single-cell Transcriptome Atlas of Cashmere Goat Hair Follicle Morphogenesis[J].Genomics,Proteomics & Bioinformatics,2021,第3期
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David Conchouso1,2,3,Amani Al-Ma'abadi2,3,Hayedeh Behzad2,3,Mohammed Alarawi2,3,Masahito Hosokawa4,5,6,Yohei Nishikawa4,7,Haruko Takeyama4,5,6,7,Katsuhiko Mineta2,8,Takashi Gojobori2,3(Department of Industrial and Mechanical Engineering Universidad de las Américas Puebla Puebla 72810;Computational Bioscience Research Center King Abdullah University of Science and Technology Thuwal 23955-6900;Biological and Environmental Sciences and Engineering DivisionKing Abdullah University of Science and TechnologyThuwal 23955-6900;Research Organization for Nano & Life Innovation Waseda University Tokyo 162-0041;Department of Life Science and Medical Bioscience Waseda University Tokyo 162-8480;Institute for Advanced Research of Biosystem Dynamics Waseda Research Institute for Science and Engineering Waseda UniversityTokyo 169-8555;Computational Bio Big-Data Open Innovation Laboratory AIST-Waseda University Tokyo 169–0072;Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and TechnologyThuwal 23955-6900).Integration of Droplet Microfluidic Tools for Single-cell Functional Metagenomics: An Engineering Head Start[J].Genomics,Proteomics & Bioinformatics,2021,第3期
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