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  • Alexandra J.Lee1,Dallas L.Mould2,Jake Crawford1,Dongbo Hu3,Rani K.Powers4,Georgia Doing2,James C.Costello5,Deborah A.Hogan2,Casey S.Greene3,6,7(Genomics and Computational Biology Graduate Program, University of Pennsylvania;Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth;Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania;Wyss Institute for Biologically Inspired Engineering, Harvard University;Department of Pharmacology, University of Colorado School of Medicine;Center for Health AI, University of Colorado School of Medicine;Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine).SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Yi-Heng Zhu1,2,Chengxin Zhang2,Yan Liu1,Gilbert S.Omenn2,3,Peter L.Freddolino2,4,Dong-Jun Yu1,Yang Zhang2,4(School of Computer Science and Engineering, Nanjing University of Science and Technology;Department of Computational Medicine and Bioinformatics, University of Michigan;Departments of Internal Medicine and Human Genetics, and School of Public Health, University of Michigan;Department of Biological Chemistry, University of Michigan).TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Haodong Xu1,Zhongming Zhao1,2,3,4(Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston;Human Genetics Center, School of Public Health, The University of Texas Health Science Center at Houston;The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences;Department of Biomedical Informatics, Vanderbilt University Medical Center).NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Feng Gao1,2,Kun Huang3,4,5,Yi Xing6,7,8(Department of Physics, School of Science, Tianjin University;Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education),Tianjin University;Department of Biostatistics and Health Data Science, Indiana University School of Medicine;IUPUI Fairbanks School of Public Health, Indianapolis;Regenstrief Institute, Indianapolis;Center for Computational and Genomic Medicine, The Children’s Hospital of Philadelphia;Department of Biomedical and Health Informatics, The Children’s Hospital of Philadelphia, Philadelphia;Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia).Artificial Intelligence in Omics[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Sen Yang1,Tao Shen1,Yuqi Fang2,Xiyue Wang3,Jun Zhang1,Wei Yang1,Junzhou Huang1,Xiao Han1(Tencent AI Lab;Department of Electronic Engineering, The Chinese University of Hong Kong;College of Computer Science, Sichuan University).DeepNoise: Signal and Noise Disentanglement Based on Classifying Fluorescent Microscopy Images via Deep Learning[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Yongbing Zhao1,Jinfeng Shao2,Yan W.Asmann1(Department of Quantitative Health Sciences, Mayo Clinic, Jacksonville;The Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health).Assessment and Optimization of Explainable Machine Learning Models Applied to Transcriptomic Data[J].Genomics,Proteomics & Bioinformatics,2022,第5期
  • Zhengguang Guo1,Chen Shao2,Yang Zhang3,Wenying Qiu4,Wenting Li4,Weimin Zhu2,Qian Yang4,Yin Huang2,Lili Pan2,Yuepan Dong2,Haidan Sun1,Xiaoping Xiao1,Wei Sun1,Chao Ma4,Liwei Zhang3(Core Facility of Instrument,Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences,School of Basic Medicine,Peking Union Medical College;State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing),Beijing Institute of Lifeomics;Department of Neurosurgery, China National Clinical Research Center for Neurological Diseases, Beijing Tiantan Hospital,Capital Medical University;Department of Human Anatomy, Histology, and Embryology, Institute of Basic Medical Sciences, Neuroscience Center,Chinese Academy of Medical Sciences, School of Basic Medicine, Peking Union Medical College).A Global Multiregional Proteomic Map of the Human Cerebral Cortex[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Qiushi Chen1,Yuanliang Zhang1,Keren Zhang1,Jie Liu1,Huozhen Pan1,Xinran Wang1,Siqi Li1,Dandan Hu1,Zhilong Lin1,Yun Zhao1,Guixue Hou1,Feng Guan2,Hong Li,Siqi Liu1,Yan Ren1,4(BGI-Shenzhen;Joint International Research Laboratory of Glycobiology and Medical Chemistry, College of Life Sciences, Northwest University;Shenzhen Seventh People’s Hospital;Institute of Interdisciplinary Integrative Medicine Research, Shanghai University of Traditional Chinese Medicine).Profiling the Bisecting N-acetylglucosamine Modification in Amniotic Membrane via Mass Spectrometry[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Limin Shang1,Yuehui Zhang1,Yuchen Liu1,Chaozhi Jin1,Yanzhi Yuan1,Chunyan Tian1,Ming Ni2,Xiaochen Bo2,Li Zhang3,Dong Li1,Fuchu He1,Jian Wang1,5(State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics;Department of Biotechnology, Beijing Institute of Radiation Medicine;Department of Rehabilitation Medicine, Nan Lou; Key Laboratory of Wound Repair and Regeneration of PLA, College of Life Sciences, Chinese PLA General Hospital;School of Basic Medical Sciences, Anhui Medical University).A Yeast BiFC-seq Method for Genome-wide Interactome Mapping[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Yuejing Jiang1,2,Xiaoji Cong3,2,Shangwen Jiang3,2,Ying Dong1,2,Lei Zhao3,Yi Zang1,Minjia Tan3,Jia Li1,4(National Center for Drug Screening, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences;Chemical Proteomics Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences;University of Chinese Academy of Sciences;Open Studio for Druggability Research of Marine Natural Products, Pilot National Laboratory for Marine Science and Technology (Qingdao)).Phosphoproteomics Reveals the AMPK Substrate Network in Response to DNA Damage and Histone Acetylation[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Zhaoxu Gao1,2,Jun Li2,Li Li1,Yanzhi Yang1,Jian Li1,Chunxiang Fu3,Danmeng Zhu1,Hang He1,Huaqing Cai4,Lei Li1,2(State Key Laboratory of Protein and Plant Gene Research,School of Life Sciences,and School of Advanced Agricultural Sciences,Peking University;Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University;CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences;National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics,Chinese Academy of Sciences).Structural and Functional Analyses of Hub MicroRNAs in An Integrated Gene Regulatory Network of Arabidopsis[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Zhongyang Liu1,2,3,Honglei Li4,Zhaoyu Jin1,Yang Li1,Feifei Guo5,Yangzhige He6,Xinyue Liu1,Yaning Qi1,7,Liying Yuan7,Fuchu He1,Dong Li1,2(State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics;School of Basic Medical Sciences, Anhui Medical University;College of Chemistry and Environmental Science, Hebei University;Suzhou Geneworks Technology Co., Ltd.;Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences;Department of Medical Research Center, Peking Union Medical College Hospital, Chinese Academy of Medical Science &Peking Union Medical College;College of Life Sciences, Hebei University).Exploration of Target Spaces in the Human Genome for Protein and Peptide Drugs[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Ning Zhang,Lingran Zhang,Linjie Li,Junyou Geng,Lei Zhao,Yan Ren,Zhongdong Dong,Feng Chen(National Key Laboratory of Wheat and Maize Crop Science / Agronomy College, Henan Agricultural University).Global Profiling of 2-hydroxyisobutyrylome in Common Wheat[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Ning Liu1,2,Linlu Qi3,Manna Huang3,2,Deng Chen1,Changfa Yin1,2,Yiying Zhang3,2,Xingbin Wang1,2,Guixin Yuan1,2,Rui-Jin Wang3,Jun Yang3,You-Liang Peng1,Xunli Lu1(State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Pest Monitoring and Green Management,China Agricultural University;MOA Key Laboratory of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University;Graduate School of China Agricultural Universit).Comparative Secretome Analysis of Magnaporthe oryzae Identified Proteins Involved in Virulence and Cell Wall Integrity[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Songbiao Zhu1,Wenxi Ding1,Yuling Chen1,Weixuan Wang2,Renhua Xu3,Chongdong Liu4,Xiaohui Liu1,Haiteng Deng1(MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systematic Biology, School of Life Sciences, Tsinghua University;Guangdong Metabolic Diseases Research Center of Integrated Chinese and Western Medicine, Guangdong Pharmaceutical University;School of Nursing, Binzhou Medical University;Department of Obstetrics and Gynecology, Beijing Chao-Yang Hospital, Capital Medical University).High VHL Expression Reverses Warburg Phenotype and Enhances Immunogenicity in Kidney Tumor Cells[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Liu Yang1,2,Wei He1,2,Yuehui Yun1,2,Yongxiang Gao1,2,Zhongliang Zhu1,2,Maikun Teng1,2,Zhi Liang1,2,Liwen Niu1,2(School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China;Division of Molecular and Cellular Biophysics, Hefei National Laboratory for Physical Sciences at the Microscale).Defining A Global Map of Functional Group-based 3D Ligand-binding Motifs[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Lei Liu1,Jia Wu2,Minxin Shi1,Fengying Wang2,Haimin Lu1,Jibing Liu3,Weiqin Chen4,Guanzhen Yu2,Dan Liu2,Jing Yang2,Qin Luo2,Yan Ni,Xing Jin2,Xiaoxia Jin6,Wen-Lian Chen2(Department of Thoracic Surgery, The Affiliated Tumor Hospital of Nantong University;Cancer Institute, Longhua Hospital, Shanghai University of Traditional Chinese Medicine;Department of Epidemiology, Tumor Institute, The Affiliated Tumor Hospital of Nantong University;Department of Clinical Laboratory, Longhua Hospital, Shanghai University of Traditional Chinese Medicine;The Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health;epartment of Pathology, The Affiliated Tumor Hospital of Nantong University).New Metabolic Alterations and A Predictive Marker Pipecolic Acid in Sera for Esophageal Squamous Cell Carcinoma[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Xiuxiu Jin1,2,3,Jingyang Liu1,2,Weiping Wang1,2,Jiangfeng Li4,Guangming Liu1,2,Ruiqi Qiu1,2,Mingzhu Yang1,2,Meng Liu1,5,Lin Yang1,5,Xiaofeng Du1,2,Bo Lei1,2,5(Henan Eye Institute, Henan Eye Hospital, People’s Hospital of Zhengzhou University, Henan Provincial People’s Hospital;Branch of National Clinical Research Center for Ocular Disease, Henan Provincial People’s Hospital;School of Medicine, Henan Provincial People’s Hospital, Henan University;Academy of Medical Sciences, Zhengzhou University;School of Basic Medical Sciences, Zhengzhou University).Identification of Age-associated Proteins and Functional Alterations in Human Retinal Pigment Epithelium[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Xuetong Li1,2,Hongxia Zhou1,2,Ning Xiao3,Xueting Wu1,Yuanhong Shan1,Longxian Chen1,2,Cuiting Wang1,Zixuan Wang1,Jirong Huang4,Aihong Li3,Xuan Li1,2(CAS Key Laboratory of Synthetic Biology / National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology, Chinese Academy of Sciences;Lixiahe Agricultural Research Institute of Jiangsu Province;Shanghai Key Laboratory of Plant Molecular Sciences, College of Life Sciences, Shanghai Normal University;University of Chinese Academy of Sciences).Expanding the Coverage of Metabolic Landscape in Cultivated Rice with Integrated Computational Approaches[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Chen Xu1,Bing Wang1,Lin Yang1,Lucas Zhongming Hu2,Lanxing Yi1,Yaxuan Wang1,Shenglan Chen1,Andrew Emili2,3,Cuihong Wan1(School of Life Sciences and Hubei Key Laboratory of Genetic Regulation and Integrative Biology,Central China Normal University;Donnelly Centre for Cellular and Biomolecular Research,University of Toronto;Departments of Biochemistry and Biology,Boston University).Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803[J].Genomics,Proteomics & Bioinformatics,2022,第4期
  • Guang Song,Emily M.Lee,Jianbo Pan,Miao Xu,Hee-Sool Rho,Yichen Cheng,Nadia Whitt,Shu Yang,Jennifer Kouznetsova,Carleen Klumpp-Thomas,Samuel G.Michael,Cedric Moore,Ki-Jun Yoon,Kimberly M.Christian,Anton Simeonov,Wenwei Huang,Menghang Xia,Ruili Huang,Madhu Lal-Nag,Hengli Tang,Wei Zheng,Jiang Qian,Hongjun Song,Guo-li Ming,Heng Zhu(Department of Pharmacology & Molecular Sciences, Johns Hopkins School of Medicine;Department of Biological Science, Florida State University, Tallahassee;Department of Ophthalmology, Johns Hopkins School of Medicine, Baltimore;National Center for Advancing Translational Sciences, National Institutes of Health, Bethesda;Sir Run Run Shaw Hospital, Zhejiang University School of Medicine;Institute for Cell Engineering, Johns Hopkins University School of Medicine, Baltimore;Department of Neuroscience and Mahoney Institute for Neurosciences, Perelman School for Medicine, University of Pennsylvania,Philadelphia;Department of Cell and Developmental Biology,Perelman School for Medicine,University of Pennsylvania,Philadelphia;Institute for Regenerative Medicine, Perelman School for Medicine, University of Pennsylvania, Philadelphia;The Epigenetics Institute, Perelman School for Medicine, University of Pennsylvania, Philadelphia).Corrigendum to ‘‘An Integrated Systems Biology Approach Identifies the Proteasome as A Critical Host Machinery for ZIKV and DENV Replication”[Genomics Proteomics Bioinformatics 19(1)(2021)108-122][J].Genomics,Proteomics & Bioinformatics,2022,第4期
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