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期刊文章列表

  • Jiayuan Zhong1,Chongyin Han2,Xuhang Zhang3,Pei Chen1,Rui Liu1,4(School of Mathematics South China University of Technology;School of Biology and Biological Engineering South China University of Technology;School of Computer Science and Engineering South China University of Technology;Pazhou Lab).scGET: Predicting Cell Fate Transition During Early Embryonic Development by Single-cell Graph Entropy[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Tao Hu,Lei Wei,Shuailin Li,Tianrun Cheng,Xuegong Zhang,Xiaowo Wang(Ministryof Education Key Laboratory of Bioinformatics;Centerfor Synthetic and Systems Biology;Bioinformatics Division;Department of AutomationTsinghua University).Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Haitao Luo1,2,3,Dechao Bu4,Lijuan Shao1,2,3,Yang Li5,Liang Sun4,Ce Wang1,2,Jing Wang1,2,3,Wei Yang1,2,Xiaofei Yang1,2,Jun Dong3,Yi Zhao4,Furong Li1,2(Translational Medicine Collaborative Innovation Center The Second Clinical Medical College (Shenzhen People’s Hospital) Jinan University;Shenzhen Key Laboratory of Stem Cell Research and Clinical Transformation;Integrated Chinese and Western Medicine Postdoctoral Research Station Jinan University;Bioinformatics Research GroupKey Laboratory of Intelligent Information ProcessingAdvanced Computing Research CenterInstitute of Computing Technology Chinese Academy of Sciences;Department of Gastrointestinal SurgeryThe Second Clinical Medical College(Shenzhen People’s Hospital)Jinan University).Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Luonan Chen1,2,3,Rong Fan4,Fuchou Tang5(State Key Laboratory of Cell Biology Shanghai Institute of Biochemistry and Cell Biology Center for Excellence in Molecular Cell Science Chinese Academy of Sciences;Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences;Key Laboratory of Systems Health Science of Zhejiang ProvinceHangzhou Institute for Advanced StudyChinese Academy of Sciences;Department of Biomedical Engineering Yale University New Haven CT 06520;Beijing Advanced Innovation Center for Genomics Biomedical Pioneering Innovation Center School of Life Sciences Peking University).Advanced Single-cell Omics Technologies and Informatics Tools for Genomics, Proteomics, and Bioinformatics Analysis[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Thanh Minh Nguyen1,Jacob John Jeevan1,Nuo Xu2,Jake Y.Chen1(Informatics Institute the University of Alabama at Birmingham Birmingham AL 35294;Collat School of Business the University of Alabama at Birmingham Birmingham AL 35294).Polar Gini Curve: A Technique to Discover Gene Expression Spatial Patterns from Single-cell RNA-seq Data[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Liang Wu1,2,3,Miaomiao Jiang2,Yuzhou Wang2,Biaofeng Zhou1,2,3,Yunfan Sun4,Kaiqian Zhou4,Jiarui Xie2,3,5,Yu Zhong2,3,5,Zhikun Zhao2,Michael Dean6,Yong Hou1,2,3,Shiping Liu1,2,3(BGI Education Center University of Chinese Academy of Sciences;BGI-Shenzhen Beishan Industrial Zone;Shenzhen Key Laboratory of Single-Cell Omics BGI-Shenzhen;Department of Liver Surgery&TransplantationLiver Cancer InstituteZhongshan HospitalFudan UniversityMOE Key Laboratory of Carcinogenesis and Cancer Invasion;School of Biology and Biological Engineering South China University of Technology;Laboratory of Translational Genomics Division of Cancer Epidemiology & Genetics National Cancer Institute Gaithersburg MD 20877).scDPN for High-throughput Single-cell CNV Detection to Uncover Clonal Evolution During HCC Recurrence[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Wei Vivian Li, Yanzeng Li(Department of Biostatistics and Epidemiology,Rutgers School of Public Health,Rutgers,The State University of New Jersey,Piscataway,NJ 08854,USA).scLink: Inferring Sparse Gene Co-expression Networks from Single-cell Expression Data[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Jianbo Li1,2,Ligang Wang3,Dawei Yu4,Junfeng Hao5,Longchao Zhang3,Adeniyi C.Adeola1,Bingyu Mao1,6,Yun Gao1,Shifang Wu1,Chunling Zhu1,Yongqing Zhang7,Jilong Ren4,Changgai Mu1,2,David M.Irwin1,6,Lixian Wang3,Tang Hai4,Haibing Xie1,Yaping Zhang1,2,8(State Key Laboratory of Genetic Resources and Evolution Yunnan Laboratory of Molecular Biology of Domestic Animals Kunming Institute of Zoology Chinese Academy of Sciences;Institute of Animal Science Chinese Academy of Agricultural Sciences;State Key Laboratory of Stem Cell and Reproductive BiologyInstitute of ZoologyChinese Academy of Sciences;Core Facility for Protein Research Institute of Biophysics Chinese Academy of Sciences;State Key Laboratory for Molecular and Developmental Biology CAS Center for Excellence in Brain Science and Intelligence Technology Institute of Genetics and Developmental Biology Chinese Academy of Sciences;Kunming College of Life Science University of Chinese Academy of Sciences;Department of Laboratory Medicine and Pathobiology University of Toronto Toronto Ontario M5S1A8;Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences).Single-cell RNA Sequencing Reveals Thoracolumbar Vertebra Heterogeneity and Rib-genesis in Pigs[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Zijuan Xin1,2,Wei Zhang1,2,Shangjin Gong1,2,Junwei Zhu1,3,Yanming Li1,Zhaojun Zhang1,4,5,3,Xiangdong Fang1,2,4,5,3(CAS Key Laboratory of Genome Science and InformationBeijing Institute of GenomicsChinese Academy of Sciences/China National Center of Bioinformation;College of Life Sciences University of Chinese Academy of Sciences;Sino-Danish College University of Chinese Academy of Sciences;Institute for Stem Cell and Regeneration Chinese Academy of Sciences;Beijing Key Laboratory of Genome and Precision Medicine Technologies).Mapping Human Pluripotent Stem Cell-derived Erythroid Differentiation by Single-cell Transcriptome Analysis[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Gang Liu1,2,Yana Li3,4,Tengjiao Zhang1,Mushan Li5,Sheng Li1,2,Qing He1,2,Shuxin Liu1,2,Minglu Xu1,2,Tinghui Xiao1,2,Zhen Shao3,Weiyang Shi6,Weida Li1,2(Translational Medical Center for Stem Cell Therapy and Institute for Regenerative MedicineShanghai East HospitalFrontier Science Center for Stem Cell Research School of Life Sciences and Technology Tongji University;Tsingtao Advanced Research Institute Tongji University;CAS Key Laboratory of Computational BiologyShanghai Institute of Nutrition and HealthUniversity of Chinese Academy of SciencesChinese Academy of Sciences;University of Chinese Academy of Sciences;Department of Statistics The Pennsylvania State University University Park PA 16802;Ministry of Education Key Laboratory of Marine Genetics and BreedingCollege of Marine Life SciencesOcean University of China).Single-cell RNA Sequencing Reveals Sexually Dimorphic Transcriptome and Type 2 Diabetes Genes in Mouse Islet β Cells[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • David G.Garmire1,Xun Zhu2,Aravind Mantravadi3,Qianhui Huang4,Breck Yunits2,Yu Liu4,Thomas Wolfgruber2,Olivier Poirion2,Tianying Zhao5,Cédric Arisdakessian2,5,Stefan Stanojevic4,Lana X.Garmire4(Department of Electrical Engineering & Computer Science University of Michigan Ann Arbor MI 48109;Epidemiology Program University of Hawaii Cancer Center Honolulu HI 96813;Department of Biostatistics University of Michigan Ann Arbor MI 48109;Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI 48105;Molecular Biosciences and Bioengineering Graduate Program University of Hawaii at Manoa Honolulu HI 96822).GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis[J].Genomics,Proteomics & Bioinformatics,2021,第3期
  • Liu Gang,Li Yana,Zhang Tengjiao,Li Mushan,Li Sheng,He Qing,Liu Shuxin,Xu Minglu,Xiao Tinghui,Shao Zhen,Shi Weiyang,Li Weida.Single-cell RNA Sequencing Reveals Sexually Dimorphic Transcriptome and Type 2 Diabetes Genes in Mouse Islet beta Cells[J].基因组蛋白质组与生物信息学报,2021,第3期
  • Xiliang Wang1,Yao He2,Qiming Zhang1,Xianwen Ren1,2,Zemin Zhang1,2(BIOPIC,Beijing Advanced Innovation Center for Genomics,and School of Life Sciences,Peking University;Peking-Tsinghua Center for Life Sciences,Academy for Advanced Interdisciplinary Studies,Peking University).Direct Comparative Analyses of 10X Genomics Chromium and Smart-seq2[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Feiyang Wang1,2,3,Wentong Jia1,2,3,Mengjie Fan4,Xuan Shao1,2,3,Zhilang Li1,2,3,Yongjie Liu5,3,Yeling Ma1,2,3,Yu-Xia Li1,2,Rong Li4,Qiang Tu5,3,Yan-Ling Wang1,2,3(State Key Laboratory of Stem Cell and Reproductive Biology,Institute of Zoology,Chinese Academy of Sciences;Beijing Institute of Stem Cell and Regenerative Medicine;University of Chinese Academy of Sciences;National Clinical Center for Obstetrics and Gynecology,Peking University Third Hospital;State Key Laboratory of Molecular Developmental Biology,Institute of Genetics and Developmental Biology,Innovation Academy for Seed Design,Chinese Academy of Sciences).Single-cell Immune Landscape of Human Recurrent Miscarriage[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Qianhui Huang1,Yu Liu2,Yuheng Du1,Lana X.Garmire2(Department of Biostatistics;Department of Computational Medicine and Bioinformatics).Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq[J].基因组蛋白质组与生物信息学报(英文版),2021,第2期
  • Zhiliang Bai1,2,Graham Su1,Rong Fan1,3,4(Department of Biomedical Engineering,Yale University;State Key Laboratory of Precision Measurement Technology and Instrument,Tianjin University;Yale Stem Cell Center and Yale Cancer Center,Yale School of Medicine;Human and Translational Immunology,Yale School of Medicine).Single-cell Analysis Technologies for Immuno-oncology Research: from Mechanistic Delineation to Biomarker Discovery[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Zhenlan Liang1,Min Li1,Ruiqing Zheng1,Yu Tian1,Xuhua Yan1,Jin Chen2,Fang-Xiang Wu3,Jianxin Wang1(School of Computer Science and Engineering,Central South University;College of Medicine,University of Kentucky;Division of Biomedical Engineering,University of Saskatchewan).SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Jiangyong Wei1,2,Tianshou Zhou3,Xinan Zhang4,Tianhai Tian5(College of Science,Huazhong Agricultural University;School of Statistics and Mathematics,Zhongnan University of Economics and Law;School of Mathematics and Statistics,Sun Yat-sen University;School of Mathematics and Statistics,Central China Normal University;School of Mathematics,Monash University).DTFLOW: Inference and Visualization of Single-cell Pseudotime Trajectory Using Diffusion Propagation[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Grace E.Lidgerwood1,2,3,Anne Senabouth4,Casey J.A.Smith-Anttila5,Vikkitharan Gnanasambandapillai4,Dominik C.Kaczorowski4,Daniela Amann-Zalcenstein5,Erica L.Fletcher1,Shalin H.Naik5,6,7,Alex W.Hewitt2,3,8,Joseph E.Powell4,9,Alice Pébay1,2,3(Department of Anatomy and Neuroscience,The University of Melbourne;Department of Surgery,The University of Melbourne;Centre for Eye Research Australia,Royal Victorian Eye and Ear Hospital;Garvan Weizmann Centre for Cellular Genomics,Garvan Institute of Medical Research,The Kinghorn Cancer Centre;Single Cell Open Research Endeavour,The Walter and Eliza Hall Institute of Medical Research;Immunology Division,The Walter and Eliza Hall Institute of Medical Research;Department of Medical Biology,The University of Melbourne;School of Medicine,Menzies Institute for Medical Research,University of Tasmania;UNSW Cellular Genomics Futures Institute,School of Medical Sciences,University of New South Wales).Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Qianqian Song1,2,Jing Su1,3,Lance D.Miller1,2,Wei Zhang1,2(Center for Cancer Genomics and Precision Oncology,Wake Forest Baptist Comprehensive Cancer Center,Wake Forest Baptist Medical Center;Department of Cancer Biology,Wake Forest School of Medicine;Department of Biostatistics,Indiana University School of Medicine).scLM: Automatic Detection of Consensus Gene Clusters Across Multiple Single-cell Datasets[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Kaikun Xie1,2,Zehua Liu1,2,3,4,5,Ning Chen1,2,Ting Chen1,2(Institute for Artificial Intelligence,State Key Lab of Intelligent Technology and Systems,Department of Computer Science and Technology,Tsinghua University;Tsinghua-Fuzhou Institute of Digital Technology,Beijing National Research Center for Information Science and Technology,Tsinghua University;Center for Computational and Integrative Biology,Massachusetts General Hospital,Harvard Medical School;Department of Molecular Biology,Massachusetts General Hospital,Harvard Medical School;Broad Institute of Massachusetts Institute of Technology and Harvard).redPATH: Reconstructing the Pseudo Development Time of Cell Lineages in Single-cell RNA-seq Data and Applications in Cancer[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Lin Li1,2,Hao Dai1,2,3,Zhaoyuan Fang1,2,Luonan Chen1,2,3,4,5(Key Laboratory of Systems Biology,Shanghai Institute of Biochemistry and Cell Biology,Center for Excellence in Molecular Cell Science,Chinese Academy of Sciences;University of Chinese Academy of Sciences;Shanghai Research Center for Brain Science and Brain-Inspired Intelligence;CAS Center for Excellence in Animal Evolution and Genetics,Chinese Academy of Sciences;Hangzhou Institute for Advanced Study,Chinese Academy of Sciences).c-CSN: Single-cell RNA Sequencing Data Analysis by Conditional Cell-specific Network[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Sarthak Sinha1,Ansuman T.Satpathy2,Weiqiang Zhou3,Hongkai Ji3,Jo A.Stratton1,4,5,Arzina Jaffer1,Nizar Bahlis6,Sorana Morrissy4,6,7,Jeff A.Biernaskie1,4,5(Department of Comparative Biology & Experimental Medicine,Faculty of Veterinary Medicine,University of Calgary;Department of Pathology,Stanford University School of Medicine;Department of Biostatistics,Bloomberg School of Public Health,Johns Hopkins University;Alberta Children's Hospital Research Institute,University of Calgary;Hotchkiss Brain Institute,University of Calgary;Arnie Charbonneau Cancer Institute,University of Calgary;Department of Biochemistry and Molecular Biology,Cumming School of Medicine,University of Calgary).Profiling Chromatin Accessibility at Single-cell Resolution[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • József á.Balog1,2,Viktor Honti3,éva Kurucz3,Beáta Kari3,László G.Puskás1,István Andó3,Gábor J.Szebeni1,4(Laboratory of Functional Genomics,Institute of Genetics,Biological Research Centre;University of Szeged,Ph.D.School in Biology;Immunology Unit,Institute of Genetics,Biological Research Centre;Department of Physiology,Anatomy and Neuroscience,Faculty of Science and Informatics,University of Szeged).Immunoprofiling of Drosophila Hemocytes by Single-cell Mass Cytometry[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Chunyu Huang1,Yong Zeng2,Wenwei Tu1(Department of Paediatric and Adolescent Medicine,Li Ka Shing Faculty of Medicine,The University of Hong Kong;Shenzhen Key Laboratory of Reproductive Immunology for Peri-implantation,Fertility Center,Shenzhen Zhongshan Urology Hospital).Single-cell RNA Sequencing Deciphers Immune Landscape of Human Recurrent Miscarriage[J].Genomics,Proteomics & Bioinformatics,2021,第2期
  • Huang Qianhui,Liu Yu,Du Yuheng,Garmire Lana X.Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data[J].基因组蛋白质组与生物信息学报,2021,第2期
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