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Zhang Zhang(National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences;CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences;China National Center for Bioinformation;University of Chinese Academy of Sciences).KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-coding Sequences[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Feng Xu1,2,Yifan Wang3,Yunchao Ling3,Chenfen Zhou3,Haizhou Wang1,2,Andrew E.Teschendorff4,Yi Zhao5,Haitao Zhao6,Yungang He2,7,Guoqing Zhang3,Zhen Yang1,2(Center for Medical Research and Innovation of Pudong Hospital, Fudan University Pudong Medical Center;Institutes of Biomedical Science, Shanghai Key Laboratory of Medical Epigenetics, International Co-laboratory of Medical Epigenetics and Metabolism (Ministry of Science and Technology), Fudan University;Bio-Med Big Data Center, CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health,University of Chinese Academy of Sciences, Chinese Academy of Sciences;CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences;Institute of Computing Technology, Chinese Academy of Sciences;Department of Liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College;Shanghai Fifth People’s Hospital, Fudan University).dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Mikaela Koutrouli1,Evangelos Karatzas1,2,Katerina Papanikolopoulou1,Georgios A.Pavlopoulos1(Institute for Fundamental Biomedical Research, BSRC ‘‘Alexander Fleming”;Department of Informatics and Telecommunications, University of Athens).NORMA: The Network Makeup Artist —A Web Tool for Network Annotation Visualization[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Chunyan Fan1,Xiujuan Lei1,Jiaojiao Tie1,Yuchen Zhang1,Fang-Xiang Wu2,Yi Pan3(School of Computer Science, Shaanxi Normal University;Division of Biomedical Engineering, University of Saskatchewan, Saskatoon;Department of Computer Science, Georgia State University, Atlanta).CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA–disease Associations and Its Application[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Shuyu Zheng,Wenyu Wang,Jehad Aldahdooh,Alina Malyutina,Tolou Shadbahr,Ziaurrehman Tanoli,Alberto Pessia,Jing Tang(Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki).SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Arsenij Ustjanzew,Jens Preussner,Mette Bentsen,Carsten Kuenne,Mario Looso(Max Planck Institute for Heart and Lung Research, Bioinformatics Unit).i2dash: Creation of Flexible, Interactive, and Web-based Dashboards for Visualization of Omics Data[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Zhongxiao Li1,Yisheng Li2,Bin Zhang3,Yu Li1,Yongkang Long1,2,Juexiao Zhou2,Xudong Zou2,Min Zhang2,Yuhui Hu2,Wei Chen2,Xin Gao1(King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Computer,Electrical and Mathematical Sciences and Engineering (CEMSE) Division;Department of Biology, Southern University of Science and Technology (SUSTech);Cancer Science Institute of Singapore).DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Qiao Liu1,2,Kui Hua1,Xuegong Zhang1,Wing Hung Wong2,Rui Jiang1(Ministry of Education Key Laboratory of Bioinformatics Bioinformatics Division, Beijing National Research Center for Information Science and Technology Center for Synthetic and Systems Biology, Department of Automation, Tsinghua University;Department of Statistics, Stanford University, Stanford).DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Fengxia Zhou1,Rui Gan1,Fan Zhang1,Chunyan Ren,Ling Yu1,Yu Si1,Zhiwei Huang1(HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology;Department of Hematology/oncology, Boston Children’s Hospital, Harvard Medical School).PHISDetector: A Tool to Detect Diverse In Silico Phage–host Interaction Signals for Virome Studies[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Ting Zhang1,2,Jingjing Zhai1,2,Xiaorong Zhang1,2,Lei Ling1,2,Menghan Li3,Shang Xie1,2,Minggui Song4,Chuang Ma1,2(State Key Laboratory of Crop Stress Biology for Arid Areas, Center of Bioinformatics, College of Life Sciences, Northwest A&F University;Key Laboratory of Biology and Genetics Improvement of Maize in Arid Area of Northwest Region, Ministry of Agriculture and Rural Affairs, Northwest A&F University;College of Plant Science, Tibet Agricultural and Animal Husbandry University;College of Information Engineering, Northwest A&F University).Interactive Web-based Annotation of Plant MicroRNAs with iwa-miRNA[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Kyubin Lee,Doyeong Yu,Daejin Hyung,Soo Young Cho,Charny Park(Bioinformatics Branch, Research Institute, National Cancer Center).ASpediaFI: Functional Interaction Analysis of Alternative Splicing Events[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Qichao Lian,Yamao Chen,Fang Chang,Ying Fu,Ji Qi(State Key Laboratory of Genetic Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University).inGAP-family: Accurate Detection of Meiotic Recombination Loci and Causal Mutations by Filtering Out Artificial Variants due to Genome Complexities[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Jianing Gao,Huan Zhang,Xiaohua Jiang,Asim Ali,Daren Zhao,Jianqiang Bao,Long Jiang,Furhan Iqbal,Qinghua Shi,Yuanwei Zhang(The First Affiliated Hospital of USTC,Hefei National Laboratory for Physical Sciences at the Microscale,CAS Key Laboratory of Innate Immunity and Chronic Diseases,School of Life Sciences,CAS Center for Excellence in Molecular Cell Science,University of Science and Technology of China, Collaborative Innovation Center of Genetics and Development).FertilityOnline: A Straightforward Pipeline for Functional Gene Annotation and Disease Mutation Discovery[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Tongwu Zhang,Alyssa Klein,Jian Sang,Jiyeon Choi,Kevin M.Brown(Division of Cancer Epidemiology and Genetics, National Cancer Institute).ezQTL: A Web Platform for Interactive Visualization and Colocalization of QTLs and GWAS Loci[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Zelin Liu1,Huiru Ding2,Jianqi She1,Chunhua Chen2,Weiguang Zhang2,Ence Yang1,3,4(Institute of Systems Biomedicine, Department of Medical Bioinformatics, School of Basic Medical Sciences, Peking University Health Science Center;Department of Human Anatomy, Histology & Embryology, School of Basic Medical Sciences, Peking University Health Science Center;Department of Microbiology & Infectious Disease Center, School of Basic Medical Sciences, Peking University Health Science Center;Chinese Institute for Brain Research).DEBKS:A Tool to Detect Differentially Expressed Circular RNAs[J].Genomics,Proteomics & Bioinformatics,2022,第3期
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Zhi-Yuan Wei1,2,3,Jun-Hua Rao1,2,3,Ming-Tian Tang1,2,3,Guo-An Zhao2,3,Qi-Chun Li2,3,Li-Ming Wu2,3,Shao-Qiang Liu2,3,Bi-Hai Li1,3,Bai-Quan Xiao1,3,Xing-Yin Liu4,Jian-Huan Chen1,2,3(Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences;Laboratory of Genomic and Precision Medicine, Wuxi School of Medicine, Jiangnan University;Joint Primate Research Center for Chronic Diseases, Jiangnan University and Institute of Zoology, Guangdong Academy of Sciences, Wuxi School of Medicine, Jiangnan University;Department of Pathogen-Microbiology Division, Nanjing Medical University).Characterization of Changes and Driver Microbes in Gut Microbiota During Healthy Aging Using A Captive Monkey Model[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Jie Zhu1,2,Liu Tian1,2,Peishan Chen1,3,Mo Han1,4,Liju Song1,2,Xin Tong1,2,Xiaohuan Sun1,Fangming Yang1,Zhipeng Lin1,Xing Liu1,Chuan Liu1,Xiaohan Wang1,Yuxiang Lin1,Kaiye Cai1,Yong Hou1,Xun Xu1,2,Huanming Yang1,5,Jian Wang1,5,Karsten Kristiansen1,4,Liang Xiao1,3,6,Tao Zhang1,4,Huijue Jia1,2,Zhuye Jie1,2,4(BGI-Shenzhen;Shenzhen Key Laboratory of Human Commensal Microorganisms and Health Research, BGI-Shenzhen;Shenzhen Engineering Laboratory of Detection and Intervention of Human Intestinal Microbiome, BGI-Shenzhen;Laboratory of Genomics and Molecular Biomedicine, Department of Biology, University of Copenhagen;James D.Watson Institute of Genome Sciences;BGI-Qingdao, BGI-Shenzhen).Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Hao Li1,Jan P.Meier-Kolthoff2,Canxin Hu1,Zhongjie Wang1,Jun Zhu1,Wei Zheng1,Yun Tian1,3,Feng Guo1,3(School of Life Sciences, Xiamen University;Department of Bioinformatics, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures;Fujian Provincial Universities Key Laboratory of Microbial Resource, Xiamen University).Panoramic Insights into Microevolution and Macroevolution of A Prevotella copri-containing Lineage in Primate Guts[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Yanze Li1,Wenming Cao1,Na L Gao1,Xing-Ming Zhao2,Wei-Hua Chen1,3(MOE Key Laboratory of Molecular Biophysics, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology;Institute of Science and Technology for Brain-Inspired Intelligence (ISTBI), Fudan University;College of Life Science, Henan Normal University).Consistent Alterations of Human Fecal Microbes After Transplantation into Germ-free Mice[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Mingyue Li1,2,Weina Guo1,Yalan Dong1,Wenzhu Wang1,Chunxia Tian1,Zili Zhang1,Ting Yu1,Haifeng Zhou1,Yang Gui1,Kaming Xue1,Junyi Li1,Feng Jiang3,Alexey Sarapultsev4,Huafang Wang5,Ge Zhang6,Shanshan Luo5,Heng Fan1,Desheng Hu1(Department of Integrated Traditional Chinese and Western Medicine, Union Hospital, Tongji Medical College,Huazhong University of Science and Technology;Department of Gastroenterology, Zhongda Hospital, Southeast University;Institute of International Education, Tianjin University of Traditional Chinese Medicine;Institute of Immunology and Physiology, Ural Branch of the Russian Academy of Sciences;Institute of Hematology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology;Institute of Integrated Bioinfomedicine and Translational Science, School of Chinese Medicine, Hong Kong Baptist University).Beneficial Effects of Celastrol on Immune Balance by Modulating Gut Microbiota in Experimental Ulcerative Colitis Mice[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Zhenwei Liu1,Tao Zhang1,Keke Wu2,Zhongshan Li1,Xiaomin Chen1,Shan Jiang1,Lifeng Du1,Saisai Lu3,Chongxiang Lin4,Jinyu Wu1,Xiaobing Wang3(Institute of Genomic Medicine, Wenzhou Medical University;Wenzhou Center for Disease Control and Prevention;Rheumatology Department, The First Affiliated Hospital of Wenzhou Medical University;Department of Stomatology, The First Affiliated Hospital of Wenzhou Medical University).Metagenomic Analysis Reveals A Possible Association Between Respiratory Infection and Periodontitis[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Anouck Becker1,Georges Pierre Schmartz2,Laura Gr?ger3,Nadja Grammes2,Valentina Galata2,Hannah Philippeit1,Jacqueline Weiland1,Nicole Ludwig3,Eckart Meese3,Sascha Tierling4,J?rn Walter4,Andreas Schwiertz5,J?rg Spiegel1,Gudrun Wagenpfeil6,Klaus Fa?bender1,Andreas Keller2,7,Marcus M.Unger1(Department of Neurology, Saarland University;Chair for Clinical Bioinformatics, Saarland University;Department of Human Genetics, Saarland University;Department of Genetics/Epigenetics, Saarland University;Institute of Microecology;Institute of Medical Biometry, Epidemiology and Medical Informatics, Saarland University;Department of Neurology, Stanford University).Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson’s Disease —The RESISTA-PD Trial[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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Xiaoai Zhang1,Qingzhi Zhai,Jinfeng Wang3,Xiuling Ma3,Bo Xing1,Hang Fan1,Zhiying Gao,Fangqing Zhao3,4,5,6,Wei Liu1,7(State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology;Department of Obstetrics and Gynecology, First Medical Center, The General Hospital of the People’s Liberation Army;Computational Genomics Lab, Beijing Institutes of Life Science, Chinese Academy of Sciences;Beijing Key Laboratory of Vector Borne and Natural Focus Infectious Disease;Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences;Key Laboratory of Systems Biology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences,Chinese Academy of Sciences;University of Chinese Academy of Sciences).Variation of the Vaginal Microbiome During and After Pregnancy in Chinese Women[J].Genomics,Proteomics & Bioinformatics,2022,第2期
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