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Sébastien Leblanc，Marie A.Brunet，Jean-Franc¸ois Jacques，Amina M.Lekehal，Andréa Duclos，Alexia Tremblay，Alexis Bruggeman-Gascon，Sondos Samandi，Mylène Brunelle，Alan A.Cohen，Michelle S.Scott，Xavier Roucou（Department of Biochemistry and Functional Genomics, Universitéde Sherbrooke；PROTEO, Quebec Network for Research on Protein Function, Structure, and Engineering, Quebec City；Department of Family Medicine, Universitéde Sherbrooke）.Newfound Coding Potential of Transcripts Unveils Missing Members of Human Protein Communities[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Zheng Wang，Guihu Zhao，Bin Li，Zhenghuan Fang，Qian Chen，Xiaomeng Wang，Tengfei Luo，Yijing Wang，Qiao Zhou，Kuokuo Li，Lu Xia，Yi Zhang，Xun Zhou，Hongxu Pan，Yuwen Zhao，Yige Wang，Lin Wang，Jifeng Guo，Beisha Tang，Kun Xia，Jinchen Li（National Clinical Research Centre for Geriatric Disorders, Department of Geriatrics, Xiangya Hospital, Central South University；Department of Neurology, Xiangya Hospital, Central South University；Centre for Medical Genetics & Hunan Key Laboratory of Medical Genetics, School of Life Sciences, Central South University；Reproductive Medicine Center, Xiangya Hospital, Central South University）.Performance Comparison of Computational Methods for the Prediction of the Function and Pathogenicity of Non-coding Variants[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Sheng Hu Qian，Yu-Li Xiong，Lu Chen，Ying-Jie Geng，Xiao-Man Tang，Zhen-Xia Chen（Hubei Key Laboratory of Agricultural Bioinformatics, College of Life Science and Technology, Huazhong Agricultural University；Hubei Hongshan Laboratory, College of Biomedicine and Health, Huazhong Agricultural University；Interdisciplinary Sciences Institute, Huazhong Agricultural University）.Dynamic Spatial-temporal Expression Ratio of X Chromosome to Autosomes but Stable Dosage Compensation in Mammals[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Ruobing Han，Lei Han，Xunwu Zhao，Qianghui Wang，Yanling Xia，Heping Li（College of Wildlife and Protected Area, Northeast Forestry University）.Haplotype-resolved Genome of Sika Deer Reveals Allele-specific Gene Expression and Chromosome Evolution[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Sijia Wu，Zhiwei Fan，Pora Kim，Liyu Huang，Xiaobo Zhou（School of Life Science and Technology, Xidian University；West China School of Public Health and West China Fourth Hospital, Sichuan University；Center for Computational Systems Medicine, School of Biomedical Informatics,The University of Texas Health Science Center at Houston）.The Integrative Studies on the Functional A-to-I RNA Editing Events in Human Cancers[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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David Earl Hostallero，Lixuan Wei，Liewei Wang，Junmei Cairns，Amin Emad（Department of Electrical and Computer Engineering, McGill University；Mila - Quebec Artificial Intelligence Institute；Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic；The Rosalind and Morris Goodman Cancer Institute, McGill University）.Preclinical-to-clinical Anti-cancer Drug Response Prediction and Biomarker Identification Using TINDL[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Fang-Yuan Shi，Yu Wang，Dong Huang，Yu Liang，Nan Liang，Xiao-Wei Chen，Ge Gao（State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Biomedical Pioneering Innovative Center(BIOPIC) & Beijing Advanced Innovation Center for Genomics (ICG), Center for Bioinformatics (CBI), Peking University；State Key Laboratory of Membrane Biology, Institute of Molecular Medicine, Peking University；Human Aging Research Institute, School of Life Science, Nanchang University；Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies）.Computational Assessment of the Expression-modulating Potential for Non-coding Variants[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Weilong Kong，Yibin Wang，Shengcheng Zhang，Jiaxin Yu，Xingtan Zhang（Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences）.Recent Advances in Assembly of Complex Plant Genomes[J].Genomics, Proteomics & Bioinformatics,2023,第3期
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Tong Tang，Xingyun Liu，Rongrong Wu，Li Shen，Shumin Ren，Bairong Shen（Institutes for Systems Genetics, Frontiers Science Centre for Disease-related Molecular Network, West China Hospital,Sichuan University；West China School of Medicine, Sichuan University）.CTRR-ncRNA: A Knowledgebase for Cancer Therapy Resistance and Recurrence Associated Non-coding RNAs[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Guangsheng Pei，Fangfang Yan，Lukas M.Simon，Yulin Dai，Peilin Jia，Zhongming Zhao（Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston；Therapeutic Innovation Center, Baylor College of Medicine；Human Genetics Center, School of Public Health, The University of Texas Health Science Center at Houston；MD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences；Department of Biomedical Informatics, Vanderbilt University Medical Center）.deCS: A Tool for Systematic Cell Type Annotations of Single-cell RNA Sequencing Data among Human Tissues[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Hao Lu，Luyu Ma，Cheng Quan，Lei Li，Yiming Lu，Gangqiao Zhou，Chenggang Zhang（Beijing Institute of Radiation Medicine, State Key Laboratory of Proteomics）.RegVar: Tissue-specific Prioritization of Non-coding Regulatory Variants[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Jian Li，Weicheng Liang，Zaozao Chen，Xingyu Li，Pan Gu，Anna Liu，Pin Chen，Qiwei Li，Xueyin Mei，Jing Yang，Jun Liu，Lincao Jiang，Zhongze Gu（School of Life Science and Technology, Southeast University；School of Biological Science & Medical Engineering, Southeast University；School of Computer, Data & Information Sciences, University of Wisconsin-Madison）.OOCDB: A Comprehensive, Systematic, and Real-time Organs-on-a-chip Database[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Ke Ding，Shanwen Sun，Yang Luo，Chaoyue Long，Jingwen Zhai，Yixiao Zhai，Guohua Wang（State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University；College of Information and Computer Engineering, Northeast Forestry University；College of Life Science, Northeast Forestry University）.PlantCADB: A Comprehensive Plant Chromatin Accessibility Database[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Shi-Yuan Tong，Ke Fan，Zai-Wei Zhou，Lin-Yun Liu，Shu-Qing Zhang，Yinghui Fu，Guang-Zhong Wang，Ying Zhu，Yong-Chun Yu（Jing’an District Central Hospital of Shanghai, State Key Laboratory of Medical Neurobiology, MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University；Shanghai Xunyin Biotechnology Co., Ltd.；CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences；Huashan Hospital, State Key Laboratory of Medical Neurobiology, MOE Frontiers Center for Brain Science, Institutes of Brain Science, Fudan University）.mvPPT: A Highly Efficient and Sensitive Pathogenicity Prediction Tool for Missense Variants[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Shaojun Wang，Ronghui You，Yunjia Liu，Yi Xiong，Shanfeng Zhu（Institute of Science and Technology for Brain-Inspired Intelligence and MOE Frontiers Center for Brain Science, Fudan University；School of Life Sciences, Fudan University；Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University；Shanghai Artificial Intelligence Laboratory；Shanghai Qi Zhi Institute；MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University；Shanghai Key Laboratory of Intelligent Information Processing and Shanghai Institute of Artificial Intelligence Algorithm,Fudan University；Zhangjiang Fudan International Innovation Center）.NetGO 3.0: Protein Language Model Improves Large-scale Functional Annotations[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Ze-Xian Liu，Panqin Wang，Qingfeng Zhang，Shihua Li，Yuxin Zhang，Yutong Guo，Chongchong Jia，Tian Shao，Lin Li，Han Cheng，Zhenlong Wang（State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Sun Yat-sen University；School of Life Sciences, Zhengzhou University）.iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Jianjian Wang，Shuang Li，Tianfeng Wang，Si Xu，Xu Wang，Xiaotong Kong，Xiaoyu Lu，Huixue Zhang，Lifang Li，Meng Feng，Shangwei Ning，Lihua Wang（Department of Neurology, The Second Affiliated Hospital of Harbin Medical University；College of Bioinformatics Science and Technology, Harbin Medical University）.RNA2Immune: A Database of Experimentally Supported Data Linking Non-coding RNA Regulation to The Immune System[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Zhihang Chen，Ziwei Luo，Di Zhang，Huiqin Li，Xuefei Liu，Kaiyu Zhu，Hongwan Zhang，Zongping Wang，Penghui Zhou，Jian Ren，An Zhao，Zhixiang Zuo（State Key Laboratory of Oncology in South China,Cancer Center,Collaborative Innovation Center for Cancer Medicine,School of Life Sciences, Sun Yat-sen University；Department of Gastrointestinal Surgery, Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases,Guangdong Institute of Gastroenterology, The Sixth Affiliated Hospital, Sun Yat-sen University；Department of Urology, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital)；Experimental Research Center, Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital)；Institute of Cancer and Basic Medicine (IBMC), Chinese Academy of Sciences）.TIGER: A Web Portal of Tumor Immunotherapy Gene Expression Resource[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Yihe Pang，Bin Liu（School of Computer Science and Technology, Beijing Institute of Technology；Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology）.TransDFL: Identification of Disordered Flexible Linkers in Proteins by Transfer Learning[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Shunheng Zhou，Yu’eHuang，Jiani Xing，Xu Zhou，Sina Chen，Jiahao Chen，Lihong Wang，Wei Jiang（Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics；Department of Pathophysiology, School of Medicine, Southeast University）.ncFO: A Comprehensive Resource of Curated and Predicted ncRNAs Associated with Ferroptosis[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Ye Chen，Yuyan Wang，Ping Zhou，Hao Huang，Rui Li，Zhen Zeng，Zifeng Cui，Rui Tian，Zhuang Jin，Jiashuo Liu，Zhaoyue Huang，Lifang Li，Zheying Huang，Xun Tian，Meiying Yu，Zheng Hu（Department of Obstetrics and Gynecology, the First Affiliated Hospital, Sun Yat-sen University；Department of Obstetrics and Gynecology, Dongguan Maternal and Child Health Care Hospital；Office of Scientific Research & Development, Sun Yat-sen University；Department of Obstetrics and Gynecology, Academician Expert Workstation, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology；Center for Translational Medicine, the First Affiliated Hospital, Sun Yat-sen University；Department of Pathology, the Central Hospital of Enshi Tujia and Miao Autonomous Prefecture；Department of Obstetrics and Gynecology, Zhongnan Hospital of Wuhan University）.VIS Atlas: A Database of Virus Integration Sites in Human Genome from NGS Data to Explore Integration Patterns[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Zhongqiu Li，Yiheng Hu，Xuelian Ma，Lingling Da，Jiajie She，Yue Liu，Xin Yi，Yaxin Cao，Wenying Xu，Yuannian Jiao，Zhen Su（State Key Laboratory of Plant Physiology and Biochemistry,College of Biological Sciences,China Agricultural University；State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences；University of Chinese Academy of Sciences）.WheatCENet: A Database for Comparative Co-expression Network Analysis of Allohexaploid Wheat and Its Progenitors[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Jingcheng Wu，Wenfan Chen，Yuxuan Zhou，Ying Chi，Xiansheng Hua，Jian Wu，Xun Gu，Shuqing Chen，Zhan Zhou（Institute of Drug Metabolism and Pharmaceutical Analysis and Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University；Alibaba-Zhejiang University Joint Research Center of Future Digital Healthcare, Alibaba DAMO Academy；The Second Affiliated Hospital of School of Medicine, and School of Public Health, Zhejiang University；Innovation Institute for Artificial Intelligence in Medicine, Zhejiang University；Department of Genetics, Development and Cell Biology, Iowa State University）.TSNAdb v2.0: The Updated Version of Tumor-specific Neoantigen Database[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Lei Du，Jin Zhang，Ying Zhao，Muheng Shang，Lei Guo，Junwei Han，The Alzheimer’s Disease Neuroimaging Initiative（Department of Intelligent Science and Technology, School of Automation, Northwestern Polytechnical University）.inMTSCCA: An Integrated Multi-task Sparse Canonical Correlation Analysis for Multi-omic Brain Imaging Genetics[J].Genomics,Proteomics & Bioinformatics,2023,第2期
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Yali Liu，Harry Cheuk-Hay Lau，Wing Yin Cheng，Jun Yu（Institute of Digestive Disease and The Department of Medicine and Therapeutics, State Key Laboratory of Digestive Disease,Li Ka Shing Institute of Health Sciences, CUHK Shenzhen Research Institute, The Chinese University of Hong Kong）.Gut Microbiome in Colorectal Cancer: Clinical Diagnosis and Treatment[J].基因组蛋白质组与生物信息学报,2023,第1期
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Xiumei Xing，Cheng Ai，Tianjiao Wang，Yang Li，Huitao Liu，Pengfei Hu，Guiwu Wang，Huamiao Liu，Hongliang Wang，Ranran Zhang，Junjun Zheng，Xiaobo Wang，Lei Wang，Yuxiao Chang，Qian Qian，Jinghua Yu，Lixin Tang，Shigang Wu，Xiujuan Shao，Alun Li，Peng Cui，Wei Zhan，Sheng Zhao，Zhichao Wu，Xiqun Shao，Yimeng Dong，Min Rong，Yihong Tan，Xuezhe Cui，Shuzhuo Chang，Xingchao Song，Tongao Yang，Limin Sun，Yan Ju，Pei Zhao，Huanhuan Fan，Ying Liu，Xinhui Wang，Wanyun Yang，Min Yang，Tao Wei，Shanshan Song，Jiaping Xu，Zhigang Yue，Qiqi Liang，Chunyi Li，Jue Ruan，Fuhe Yang（Key Laboratory of Genetics, Breeding and Reproduction of Special Economic Animals, Ministry of Agriculture and Rural Affairs, Institute of Special Animal and Plant Sciences, Chinese Academy of Agricultural Sciences；Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences；CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences；Annoroad Gene Technology (Beijing) Co., Ltd；Novogene Bioinformatics Institute）.The First High-quality Reference Genome of Sika Deer Provides Insights into High-tannin Adaptation[J].Genomics,Proteomics & Bioinformatics,2023,第1期
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Chengbo Zhang，Zhenghan Lian，Bo Xu，Qingzhong Shen，Mingwei Bao，Zunxi Huang，Hongchen Jiang，Wenjun Li（Engineering Research Center of Sustainable Development and Utilization of Biomass Energy,Ministry of Education,School of Life Sciences, Yunnan Normal University；State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-sen University；Xishuangbanna National Nature Reserve Management and Protection Bureau；Asian Elephant Provenance Breeding and Rescue Center in Xishuangbanna；State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences）.Gut Microbiome Variation Along A Lifestyle Gradient Reveals Threats Faced by Asian Elephants[J].基因组蛋白质组与生物信息学报,2023,第1期
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Renfei Ma，Shangfu Li，Wenshuo Li，Lantian Yao，Hsien-Da Huang，Tzong-Yi Lee（Warshel Institute for Computational Biology, School of Medicine, The Chinese University of Hong Kong；School of Life Sciences, University of Science and Technology of China；School of Science and Engineering, The Chinese University of Hong Kong；School of Life and Health Sciences, School of Medicine, The Chinese University of Hong Kong）.KinasePhos 3.0: Redesign and Expansion of the Prediction on Kinase-specific Phosphorylation Sites[J].基因组蛋白质组与生物信息学报,2023,第1期
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Shuangsang Fang，Bichao Chen，Yong Zhang，Haixi Sun，Longqi Liu，Shiping Liu，Yuxiang Li，Xun Xu（BGI-Shenzhen；BGI-Beijing；Guangdong Bigdata Engineering Technology Research Center for Life Sciences）.Computational Approaches and Challenges in Spatial Transcriptomics[J].基因组蛋白质组与生物信息学报,2023,第1期
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