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Duo Chen1,Xue Yuan1,Xuehai Zheng1,Jingping Fang1,Gang Lin1,Rongmao Li2,Jiannan Chen1,Wenjin He1,Zhen Huang1,Wenfang Fan1,Limin Liang1,Chentao Lin1,Jinmao Zhu1,Youqiang Chen1,Ting Xue1(The Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Products of the State Oceanic Administration, Center of Engineering Technology Research for Microalga Germplasm Improvement of Fujian,Fujian Key Laboratory of Special Marine Bioresource Sustainable Utilization, Fujian Key Laboratory of Developmental and Neural Biology, Southern Institute of Oceanography, College of Life Sciences, Fujian Normal University;Fujian Fishery Resources Monitoring Center).Multi-omics Analyses Provide Insight into the Biosynthesis Pathways of Fucoxanthin in Isochrysis galbana[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Qian Zhao1,Longqing Shi1,2,Weiyi He1,Jinyu Li1,3,Shijun You1,Shuai Chen4,Jing Lin4,Yibin Wang4,Liwen Zhang1,Guang Yang1,Liette Vasseur1,5,Minsheng You1(State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops,Institute of Applied Ecology,Fujian Agriculture and Forestry University;Institute of Rice, Fujian Academy of Agricultural Sciences;Tea Research Institute, Fujian Academy of Agricultural Sciences;Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University;Department of Biological Sciences, Brock University, St.Catharines).Genomic Variations in the Tea Leafhopper Reveal the Basis of Its Adaptive Evolution[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Cuidan Li1,Xiaoyuan Jiang1,2,Tingting Yang1,3,Yingjiao Ju1,3,Zhe Yin2,Liya Yue1,Guannan Ma1,Xuebing Wang1,Ying Jing2,Xinhua Luo2,Shuangshuang Li1,3,Xue Yang1,3,Fei Chen1,3,4,5,Dongsheng Zhou2(CAS Key Laboratory of Genome Sciences & Information, Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology;University of Chinese Academy of Sciences;State Key Laboratory of Pathogenesis, Prevention and Treatment of High Incidence Diseases in Central Asia;Beijing Key Laboratory of Genome and Precision Medicine Technologies).Genomic Epidemiology of Carbapenemaseproducing Klebsiella pneumoniae in China[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yinqing Yang1,Kang Zhang1,Ya Xiao1,2,Lingkui Zhang1,Yile Huang1,Xing Li1,Shumin Chen1,Yansong Peng3,Shuhua Yang1,Yongbo Liu4,Feng Cheng1(Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops, Ministry of Agriculture and Rural Affairs, Sino-Dutch Joint Laboratory of Horticultural Genomics;Biotechnology Research Center, Xiangxi Academy of Agricultural Sciences;Lushan Botanical Garden, Chinese Academy of Sciences;State Environmental Protection Key Laboratory of Regional Eco-process and Function Assessment, Chinese Research Academy of Environmental Sciences).Genome Assembly and Population Resequencing Reveal the Geographical Divergence of Shanmei(Rubus corchorifolius)[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yingbo Shen1,2,3,Rong Zhang4,Dongyan Shao1,Lu Yang1,Jiayue Lu4,Congcong Liu4,Xueyang Wang1,Junyao Jiang1,Boxuan Wang1,Congming Wu1,2,Julian Parkhill5,Yang Wang1,2,Timothy R.Walsh6,George F.Gao3,7,Zhangqi Shen1,2(College of Veterinary Medicine, China Agricultural University;Guangdong Laboratory for Lingnan Modern Agriculture;CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences;The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University;Department of Veterinary Medicine, University of Cambridge;Department of Biology, University of Oxford;Chinese Center for Disease Control and Prevention).Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yang Zhang1,2,Fan Mao1,2,Shu Xiao1,2,Haiyan Yu3,Zhiming Xiang1,2,Fei Xu4,Jun Li1,2,Lili Wang3,Yuanyan Xiong5,Mengqiu Chen5,Yongbo Bao6,Yuewen Deng7,Quan Huo8,Lvping Zhang1,2,Wenguang Liu1,2,Xuming Li3,Haitao Ma1,2,Yuehuan Zhang1,2,Xiyu Mu3,Min Liu3,Hongkun Zheng3,Nai-Kei Wong1,9,Ziniu Yu1,2(CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, Innovation Academy of South China Sea Ecology and Environmental Engineering, South China Sea Institute of Oceanology, Chinese Academy of Sciences;Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou);Biomarker Technologies Co., Ltd;CAS Key Laboratory of Experimental Marine Biology, Center for Mega-Science, Institute of Oceanology, Chinese Academy of Sciences;State Key Laboratory of Biocontrol, College of Life Sciences, Sun Yat-sen University;Zhejiang Key Laboratory of Aquatic Germplasm Resources, College of Biological and Environmental Sciences, Zhejiang Wanli University;College of Fisheries, Guangdong Ocean University;Hebei Key Laboratory of Applied Chemistry, College of Environmental and Chemical Engineering, Yanshan University;Department of Pharmacology, Shantou University Medical College).Comparative Genomics Reveals Evolutionary Drivers of Sessile Life and Left-right Shell Asymmetry in Bivalves[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Mei-Jing Dong1,Hao Luo1,Feng Gao1,2,3(Department of Physics, School of Science, Tianjin University;Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), Tianjin University;SynBio Research Platform,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)).Ori-Finder 2022: A Comprehensive Web Server for Prediction and Analysis of Bacterial Replication Origins[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yuan Gao1,2,3,Jinning Zhang4,5,Zhenyu Liu1,3,Shuyue Qi1,3,Xinmeng Guo4,5,Hui Wang4,5,Yanfei Cheng4,5,Shuang Tian4,5,Minyue Ma4,5,Hongmei Peng4,5,Lu Wen1,3,Fuchou Tang1,2,3,Yuanqing Yao4,5(Biomedical Pioneering Innovation Center, School of Life Sciences, Peking University;Department of Gynaecology and Obstetrics, The First Medical Center of PLA General Hospital;Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University;Reproductive Medicine and Prenatal Diagnosis Center, The University of Hong Kong-Shenzhen Hospital;Beijing Advanced Innovation Center for Genomics, MOE Key Laboratory of Cell Proliferation and Differentiation).Single-cell Sequencing Reveals Clearance of Blastula Chromosomal Mosaicism in In Vitro Fertilization Babies[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Mingpeng Zhang,Qiang Yang,Huashui Ai,Lusheng Huang(State Key Laboratory of Swine Genetic Improvement and Production Technology, Jiangxi Agricultural University).Revisiting the Evolutionary History of Pigs via De Novo Mutation Rate Estimation in A Three-generation Pedigree[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Khaista Rahman1,2,Muhammad Jamal1,2,Xi Chen1,2,Wei Zhou1,2,Bin Yang1,2,Yanyan Zou1,2,Weize Xu1,2,Yingying Lei1,2,Chengchao Wu1,2,Xiaojian Cao1,2,Rohit Tyagi1,2,Muhammad Ahsan Naeem1,2,Da Lin1,2,Zeshan Habib1,2,Nan Peng1,Zhen F.Fu1,2,Gang Cao1,2,3,4(State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University;College of Veterinary Medicine, Huazhong Agricultural University;Bio-Medical Center, Huazhong Agricultural University;Key Laboratory of Preventive Veterinary Medicine in Hubei Province, the Cooperative Innovation Center for Sustainable Pig Production).Reprogramming Mycobacterium tuberculosis CRISPR System for Gene Editing and Genomewide RNA Interference Screening[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Zhongqiang Xia1,Xuelei Dai2,Wei Fan1,Changying Liu3,Meirong Zhang1,Peipei Bian2,Yuping Zhou1,Liang Li1,Baozhong Zhu1,Shuman Liu1,Zhengang Li4,Xiling Wang5,Maode Yu5,Zhonghuai Xiang1,Yu Jiang2,Aichun Zhao1(State Key Laboratory of Silkworm Genome Biology, Institute of Sericulture and Systems Biology, Southwest University;Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University;Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, Chengdu University;The Sericultural and Apicultural Research Institute, Yunnan Academy of Agricultural Sciences;College of Sericulture, Textile and Biomass Sciences, Southwest University).Chromosome-level Genomes Reveal the Genetic Basis of Descending Dysploidy and Sex Determination in Morus Plants[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Wan-Ping Lee1,2,3,4,Qihui Zhu2,Xiaofei Yang2,5,6,Silvia Liu2,Eliza Cerveira2,Mallory Ryan2,Adam Mil-Homens2,Lauren Bellfy2,Kai Ye1,6,Charles Lee1,2,7,Chengsheng Zhang1,2(Precision Medicine Center, The First Affiliated Hospital of Xi’an Jiaotong University;The Jackson Laboratory for Genomic Medicine, Farmington;School of Cyber Science and Engineering, Xi’an Jiaotong University;Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania;School of Computer Science and Technology, Faculty of Electronic and Information Engineering, Xi’an Jiaotong University;MOE Key Lab for Intelligent Networks & Networks Security, Faculty of Electronic and Information Engineering, Xi’an Jiaotong University;Department of Life Sciences, Ewha Womans University).JAX-CNV: A Whole-genome Sequencing-based Algorithm for Copy Number Detection at Clinical Grade Level[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yuli Li1,2,Yaran Liu1,Hongwei Yu1,Fuyun Liu1,Wentao Han1,Qifan Zeng1,3,4,Yuehuan Zhang5,Lingling Zhang1,2,Jingjie Hu1,4,Zhenmin Bao1,3,4,Shi Wang1,2,4(Sars-Fang Centre&MOE Key Laboratory of Marine Genetics and Breeding,College of Marine Life Sciences,Ocean University of China;Laboratory for Marine Biology and Biotechnology, Pilot Qingdao National Laboratory for Marine Science and Technology;Laboratory for Marine Fisheries Science and Food Production Processes, Pilot Qingdao National Laboratory for Marine Science and Technology;Key Laboratory of Tropical Aquatic Germplasm of Hainan Province, Sanya Oceanographic Institution, Ocean University of China;CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences).Adaptive Bird-like Genome Miniaturization During the Evolution of Scallop Swimming Lifestyle[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Min Li1,2,3,Baosheng Wu4,Peng Zhang1,Ye Li4,Wenjie Xu4,Kun Wang4,Qiang Qiu4,Jun Zhang1,Jie Li1,Chi Zhang5,Jiangtao Fan1,Chenguang Feng4,6,Zuozhi Chen1,2,3(South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences;School of Ecology and Environment, Northwestern Polytechnical University;Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou);Key Laboratory for Sustainable Utilization of Open-Sea Fishery, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Fishery Ecology and Environment;Qinghai Provincial Key Laboratory of Crop Molecular Breeding, CAS Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences;CAS Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences).Genomes of Two Flying Squid Species Provide Novel Insights into Adaptations of Cephalopods to Pelagic Life[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yali Hou1,2,Shilei Zhao1,2,Qi Liu1,2,Xiaolong Zhang1,2,Tong Sha1,2,Yankai Su1,2,Wenming Zhao1,2,Yiming Bao1,2,Yongbiao Xue1,2,Hua Chen1,2,3(Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for Bioinformation;University of Chinese Academy of Sciences;Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences).Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yixue Li1,2(Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences;Guangzhou Laboratory).A Beloved Bioinformatician Buddy—In Memory of Professor Weimin Zhu[J].Genomics,Proteomics & Bioinformatics,2022,第6期
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Yawei Li1,Xin Wu2,Ping Yang3,Guoqian Jiang4,Yuan Luo1(Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University;Department of Medicine, University of Illinois at Chicago;Department of Quantitative Health Sciences, Mayo Clinic, Rochester;Department of Artificial Intelligence and Informatics, Mayo Clinic).Machine Learning for Lung Cancer Diagnosis,Treatment, and Prognosis[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Hui Wan1,Liang Chen2,Minghua Deng1,3,4(School of Mathematical Sciences, Peking University;Huawei Technologies Co., Ltd.;Center for Statistical Science, Peking University;Center for Quantitative Biology, Peking University).scEMAIL: Universal and Source-free Annotation Method for scRNA-seq Data with Novel Cell-type Perception[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Yuguo Zha,Hui Chong,Pengshuo Yang,Kang Ning(MOE Key Laboratory of Molecular Biophysics, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of Artificial Intelligence Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology).Microbial Dark Matter: from Discovery to Applications[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Shao-Wu Zhang,Jing-Yu Xu,Tong Zhang(MOE Key Laboratory of Information Fusion Technology, School of Automation, Northwestern Polytechnical University).DGMP: Identifying Cancer Driver Genes by Jointing DGCN and MLP from Multi-omics Genomic Data[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Zhiting Wei1,Sheng Zhu1,Xiaohan Chen1,Chenyu Zhu1,Bin Duan1,Qi Liu1,2,3(Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University;Key Laboratory of Spine and Spinal Cord Injury Repair and Regeneration (Tongji University), Ministry of Education,Orthopaedic Department of Tongji Hospital, Bioinformatics Department, School of Life Sciences and Technology,Tongji University;Shanghai Research Institute for Intelligent Autonomous Systems).DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Yiran Shan1,Qian Zhang1,Wenbo Guo1,Yanhong Wu1,Yuxin Miao1,Hongyi Xin2,3,Qiuyu Lian2,3,Jin Gu1(MOE Key Laboratory of Bioinformatics, BNRIST Bioinformatics Division, Department of Automation, Tsinghua University;UM-SJTU Joint Institute, Shanghai Jiao Tong University;Department of Automation, Shanghai Jiao Tong University).TIST:Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Matthew Brendel1,2,Chang Su3,Zilong Bai1,Hao Zhang1,Olivier Elemento2,Fei Wang1(Department of Population Health Sciences, Weill Cornell Medicine, Cornell University;Institute for Computational Biomedicine,Caryl and Israel Englander Institute for Precision Medicine,Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University;Department of Health Service Administration and Policy, Temple University).Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review[J].基因组蛋白质组与生物信息学报(英文版),2022,第5期
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Stefan Stanojevic1,Yijun Li2,Aleksandar Ristivojevic3,Lana X.Garmire1(Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor;Department of Biostatistics, University of Michigan, Ann Arbor;Amherst College, Amherst).Computational Methods for Single-cell Multi-omics Integration and Alignment[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Juexiao Zhou1,2,3,Bin Zhang1,2,Haoyang Li1,2,Longxi Zhou1,2,Zhongxiao Li1,2,Yongkang Long1,2,Wenkai Han1,2,Mengran Wang3,Huanhuan Cui3,4,5,Jingjing Li3,Wei Chen3,4,5,Xin Gao1,2(Computer Science Program, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology;Computational Bioscience Research Center,King Abdullah University of Science and Technology;Department of Biology, School of Life Sciences, Southern University of Science and Technology;Shenzhen Key Laboratory of Gene Regulation and Systems Biology, School of Life Sciences, Southern University of Science and Technology;Academy for Advanced Interdisciplinary Studies, Southern University of Science and Technology).Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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Wubing Zhang1,2,Shourya S.Roy Burman3,4,Jiaye Chen5,Katherine A.Donovan3,4,Yang Cao6,Chelsea Shu3,7,Boning Zhang1,2,Zexian Zeng1,2,Shengqing Gu1,2,Yi Zhang1,2,Dian Li1,2,Eric S.Fischer3,4,Collin Tokheim1,2,X.Shirley Liu1,2(Department of Data Science, Dana-Farber Cancer Institute, Boston;Department of Biostatistics, Harvard T.H.Chan School of Public Health;Department of Cancer Biology, Dana-Farber Cancer Institute;Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School;Department of Biomedical Informatics, Harvard Medical School;Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-resource and Eco-environment, Ministry of Education, College of Life Sciences, Sichuan University;Research Scholar Initiative, Graduate School of Arts and Sciences, Harvard University).Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability of Targeted Protein Degradation[J].Genomics,Proteomics & Bioinformatics,2022,第5期
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